miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 3' -59.3 NC_002512.2 + 120471 0.66 0.880584
Target:  5'- uCGuguUUCGCgaagaGGAGACGCUGGgGaCGaCGc -3'
miRNA:   3'- -GCu--AAGCGg----CCUCUGCGACCgC-GC-GU- -5'
9244 3' -59.3 NC_002512.2 + 99909 0.66 0.880584
Target:  5'- uCGAgggCGCCGGGGGCccGCcgaagGGCG-GCGu -3'
miRNA:   3'- -GCUaa-GCGGCCUCUG--CGa----CCGCgCGU- -5'
9244 3' -59.3 NC_002512.2 + 30395 0.66 0.880584
Target:  5'- uGAUccUCGCggcccugacggaCGGGGACGCgGGCGuCGUc -3'
miRNA:   3'- gCUA--AGCG------------GCCUCUGCGaCCGC-GCGu -5'
9244 3' -59.3 NC_002512.2 + 120629 0.66 0.880584
Target:  5'- gGAggCGgCGGgacgGGACGCcgGGgGCGCGg -3'
miRNA:   3'- gCUaaGCgGCC----UCUGCGa-CCgCGCGU- -5'
9244 3' -59.3 NC_002512.2 + 115702 0.66 0.880584
Target:  5'- ----cCGCCGGGcccGACGCcGGCGC-CAc -3'
miRNA:   3'- gcuaaGCGGCCU---CUGCGaCCGCGcGU- -5'
9244 3' -59.3 NC_002512.2 + 158975 0.66 0.880584
Target:  5'- gCGGUUCGgCGGccacggcgGGGCGgaGGCG-GCGg -3'
miRNA:   3'- -GCUAAGCgGCC--------UCUGCgaCCGCgCGU- -5'
9244 3' -59.3 NC_002512.2 + 103377 0.66 0.880584
Target:  5'- ----cCGCCGGAGcCGCcgaGGCGCucGCGc -3'
miRNA:   3'- gcuaaGCGGCCUCuGCGa--CCGCG--CGU- -5'
9244 3' -59.3 NC_002512.2 + 128812 0.66 0.873782
Target:  5'- gCGAgaggUCGgCGGcGGCGCUgucGGCGCaGCu -3'
miRNA:   3'- -GCUa---AGCgGCCuCUGCGA---CCGCG-CGu -5'
9244 3' -59.3 NC_002512.2 + 117060 0.66 0.873782
Target:  5'- cCGuucgUGCCGGAGcacgcgcagGCGCUGGagGUGCGg -3'
miRNA:   3'- -GCuaa-GCGGCCUC---------UGCGACCg-CGCGU- -5'
9244 3' -59.3 NC_002512.2 + 96477 0.66 0.873782
Target:  5'- --uUUCGuCCGcGGGGCGCcaUGGCGuCGCc -3'
miRNA:   3'- gcuAAGC-GGC-CUCUGCG--ACCGC-GCGu -5'
9244 3' -59.3 NC_002512.2 + 89000 0.66 0.873782
Target:  5'- cCGGagCG-CGGGGACGUcgGGCaGCGCGa -3'
miRNA:   3'- -GCUaaGCgGCCUCUGCGa-CCG-CGCGU- -5'
9244 3' -59.3 NC_002512.2 + 108798 0.66 0.873782
Target:  5'- aCGGgcCGCUGcGGGCGCUguuccgcgaGGCGUGCGa -3'
miRNA:   3'- -GCUaaGCGGCcUCUGCGA---------CCGCGCGU- -5'
9244 3' -59.3 NC_002512.2 + 219659 0.66 0.866785
Target:  5'- aGGUUCGCCcgucGGGAUcugGGCGCGCc -3'
miRNA:   3'- gCUAAGCGGc---CUCUGcgaCCGCGCGu -5'
9244 3' -59.3 NC_002512.2 + 61676 0.66 0.866785
Target:  5'- gCGAgcCGuacaaacacCCGGAGACGa-GGCGUGCGu -3'
miRNA:   3'- -GCUaaGC---------GGCCUCUGCgaCCGCGCGU- -5'
9244 3' -59.3 NC_002512.2 + 83894 0.66 0.866785
Target:  5'- uCGcgUCGUCGGGGAagaGCUGG-GCcCAg -3'
miRNA:   3'- -GCuaAGCGGCCUCUg--CGACCgCGcGU- -5'
9244 3' -59.3 NC_002512.2 + 222214 0.66 0.866785
Target:  5'- --cUUCGUCGGGGugGCcgucggGGC-CGCGu -3'
miRNA:   3'- gcuAAGCGGCCUCugCGa-----CCGcGCGU- -5'
9244 3' -59.3 NC_002512.2 + 41547 0.66 0.866785
Target:  5'- aGAggUUGCgGGccuGcACGgUGGCGCGCAg -3'
miRNA:   3'- gCUa-AGCGgCCu--C-UGCgACCGCGCGU- -5'
9244 3' -59.3 NC_002512.2 + 220065 0.66 0.866785
Target:  5'- ----cCGCCcGAGACuCUGGCGCGgAu -3'
miRNA:   3'- gcuaaGCGGcCUCUGcGACCGCGCgU- -5'
9244 3' -59.3 NC_002512.2 + 196399 0.66 0.866785
Target:  5'- gCGggUCugGCgCGGGGACGCggggGGCG-GCGg -3'
miRNA:   3'- -GCuaAG--CG-GCCUCUGCGa---CCGCgCGU- -5'
9244 3' -59.3 NC_002512.2 + 105842 0.66 0.866074
Target:  5'- aCGAgggUGCCGucGAucagggcguacagGACGCaGGCGCGCGg -3'
miRNA:   3'- -GCUaa-GCGGC--CU-------------CUGCGaCCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.