Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9244 | 3' | -59.3 | NC_002512.2 | + | 158975 | 0.66 | 0.880584 |
Target: 5'- gCGGUUCGgCGGccacggcgGGGCGgaGGCG-GCGg -3' miRNA: 3'- -GCUAAGCgGCC--------UCUGCgaCCGCgCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 30395 | 0.66 | 0.880584 |
Target: 5'- uGAUccUCGCggcccugacggaCGGGGACGCgGGCGuCGUc -3' miRNA: 3'- gCUA--AGCG------------GCCUCUGCGaCCGC-GCGu -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 115702 | 0.66 | 0.880584 |
Target: 5'- ----cCGCCGGGcccGACGCcGGCGC-CAc -3' miRNA: 3'- gcuaaGCGGCCU---CUGCGaCCGCGcGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 99909 | 0.66 | 0.880584 |
Target: 5'- uCGAgggCGCCGGGGGCccGCcgaagGGCG-GCGu -3' miRNA: 3'- -GCUaa-GCGGCCUCUG--CGa----CCGCgCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 120629 | 0.66 | 0.880584 |
Target: 5'- gGAggCGgCGGgacgGGACGCcgGGgGCGCGg -3' miRNA: 3'- gCUaaGCgGCC----UCUGCGa-CCgCGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 103377 | 0.66 | 0.880584 |
Target: 5'- ----cCGCCGGAGcCGCcgaGGCGCucGCGc -3' miRNA: 3'- gcuaaGCGGCCUCuGCGa--CCGCG--CGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 120471 | 0.66 | 0.880584 |
Target: 5'- uCGuguUUCGCgaagaGGAGACGCUGGgGaCGaCGc -3' miRNA: 3'- -GCu--AAGCGg----CCUCUGCGACCgC-GC-GU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 128812 | 0.66 | 0.873782 |
Target: 5'- gCGAgaggUCGgCGGcGGCGCUgucGGCGCaGCu -3' miRNA: 3'- -GCUa---AGCgGCCuCUGCGA---CCGCG-CGu -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 108798 | 0.66 | 0.873782 |
Target: 5'- aCGGgcCGCUGcGGGCGCUguuccgcgaGGCGUGCGa -3' miRNA: 3'- -GCUaaGCGGCcUCUGCGA---------CCGCGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 89000 | 0.66 | 0.873782 |
Target: 5'- cCGGagCG-CGGGGACGUcgGGCaGCGCGa -3' miRNA: 3'- -GCUaaGCgGCCUCUGCGa-CCG-CGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 117060 | 0.66 | 0.873782 |
Target: 5'- cCGuucgUGCCGGAGcacgcgcagGCGCUGGagGUGCGg -3' miRNA: 3'- -GCuaa-GCGGCCUC---------UGCGACCg-CGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 96477 | 0.66 | 0.873782 |
Target: 5'- --uUUCGuCCGcGGGGCGCcaUGGCGuCGCc -3' miRNA: 3'- gcuAAGC-GGC-CUCUGCG--ACCGC-GCGu -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 222214 | 0.66 | 0.866785 |
Target: 5'- --cUUCGUCGGGGugGCcgucggGGC-CGCGu -3' miRNA: 3'- gcuAAGCGGCCUCugCGa-----CCGcGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 220065 | 0.66 | 0.866785 |
Target: 5'- ----cCGCCcGAGACuCUGGCGCGgAu -3' miRNA: 3'- gcuaaGCGGcCUCUGcGACCGCGCgU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 196399 | 0.66 | 0.866785 |
Target: 5'- gCGggUCugGCgCGGGGACGCggggGGCG-GCGg -3' miRNA: 3'- -GCuaAG--CG-GCCUCUGCGa---CCGCgCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 219659 | 0.66 | 0.866785 |
Target: 5'- aGGUUCGCCcgucGGGAUcugGGCGCGCc -3' miRNA: 3'- gCUAAGCGGc---CUCUGcgaCCGCGCGu -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 41547 | 0.66 | 0.866785 |
Target: 5'- aGAggUUGCgGGccuGcACGgUGGCGCGCAg -3' miRNA: 3'- gCUa-AGCGgCCu--C-UGCgACCGCGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 61676 | 0.66 | 0.866785 |
Target: 5'- gCGAgcCGuacaaacacCCGGAGACGa-GGCGUGCGu -3' miRNA: 3'- -GCUaaGC---------GGCCUCUGCgaCCGCGCGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 83894 | 0.66 | 0.866785 |
Target: 5'- uCGcgUCGUCGGGGAagaGCUGG-GCcCAg -3' miRNA: 3'- -GCuaAGCGGCCUCUg--CGACCgCGcGU- -5' |
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9244 | 3' | -59.3 | NC_002512.2 | + | 105842 | 0.66 | 0.866074 |
Target: 5'- aCGAgggUGCCGucGAucagggcguacagGACGCaGGCGCGCGg -3' miRNA: 3'- -GCUaa-GCGGC--CU-------------CUGCGaCCGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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