miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9244 5' -56.1 NC_002512.2 + 228002 0.66 0.939573
Target:  5'- gGgCCgGAGCCGGACGGgaCgcgGGACGAg -3'
miRNA:   3'- -CgGGgCUUGGUCUGCUagGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 19339 0.66 0.939573
Target:  5'- aCCUCGuacACCAGACGAUgCcGGACc- -3'
miRNA:   3'- cGGGGCu--UGGUCUGCUAgGaCCUGuu -5'
9244 5' -56.1 NC_002512.2 + 86802 0.66 0.939573
Target:  5'- cGCCUgGAGCCGGuguACGG--CUGGGCAAc -3'
miRNA:   3'- -CGGGgCUUGGUC---UGCUagGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 222930 0.66 0.939573
Target:  5'- gGCCCgCGGGCCA-ACGA-CCUGGcCGg -3'
miRNA:   3'- -CGGG-GCUUGGUcUGCUaGGACCuGUu -5'
9244 5' -56.1 NC_002512.2 + 154457 0.66 0.939573
Target:  5'- cGCCCCGAuCCGGACGucccgcccUCgaGGAgGc -3'
miRNA:   3'- -CGGGGCUuGGUCUGCu-------AGgaCCUgUu -5'
9244 5' -56.1 NC_002512.2 + 143677 0.66 0.939573
Target:  5'- uCCCCGaAGCCGGGCGGggugUC-GGGCAc -3'
miRNA:   3'- cGGGGC-UUGGUCUGCUa---GGaCCUGUu -5'
9244 5' -56.1 NC_002512.2 + 131575 0.66 0.939573
Target:  5'- gGCCCCGAGCCccucgggaaAGACG-UCCUucaGCGAg -3'
miRNA:   3'- -CGGGGCUUGG---------UCUGCuAGGAcc-UGUU- -5'
9244 5' -56.1 NC_002512.2 + 138692 0.66 0.939573
Target:  5'- uGCCCCGGGuggcggucucCCuGACccgGAUCCgcaGGACAAa -3'
miRNA:   3'- -CGGGGCUU----------GGuCUG---CUAGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 193469 0.66 0.939112
Target:  5'- gGCCCuccgggaCGAGgcCCAcGACGG-CCUGGACGAc -3'
miRNA:   3'- -CGGG-------GCUU--GGU-CUGCUaGGACCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 122895 0.66 0.937714
Target:  5'- aCCCCGGcCCGGGCG-UCCcggccuucuacggGGACGAg -3'
miRNA:   3'- cGGGGCUuGGUCUGCuAGGa------------CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 16372 0.67 0.934857
Target:  5'- aCCCCGAcCCGGACGAcgcCCUcgaagucgacGGGCGc -3'
miRNA:   3'- cGGGGCUuGGUCUGCUa--GGA----------CCUGUu -5'
9244 5' -56.1 NC_002512.2 + 130174 0.67 0.934857
Target:  5'- gGCCCgCGAcgGCgCGGACGAggaCgaGGACGAg -3'
miRNA:   3'- -CGGG-GCU--UG-GUCUGCUa--GgaCCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 103496 0.67 0.934857
Target:  5'- cGCCCgGGGCCccGGGCGcucUCCcGGGCGg -3'
miRNA:   3'- -CGGGgCUUGG--UCUGCu--AGGaCCUGUu -5'
9244 5' -56.1 NC_002512.2 + 14198 0.67 0.934857
Target:  5'- uCCCCGAACCAGAaGGgcagCCgGuGACGGa -3'
miRNA:   3'- cGGGGCUUGGUCUgCUa---GGaC-CUGUU- -5'
9244 5' -56.1 NC_002512.2 + 111287 0.67 0.934857
Target:  5'- cGUCCCGcGGCCAGACGcccgggGUCUgGGACc- -3'
miRNA:   3'- -CGGGGC-UUGGUCUGC------UAGGaCCUGuu -5'
9244 5' -56.1 NC_002512.2 + 132003 0.67 0.934857
Target:  5'- cGCCCCGGgcGCCGGGgGGaCCUcGGCGg -3'
miRNA:   3'- -CGGGGCU--UGGUCUgCUaGGAcCUGUu -5'
9244 5' -56.1 NC_002512.2 + 41329 0.67 0.934857
Target:  5'- uCCCCGAACaC-GACcgGAUCCgacGGACGAa -3'
miRNA:   3'- cGGGGCUUG-GuCUG--CUAGGa--CCUGUU- -5'
9244 5' -56.1 NC_002512.2 + 139981 0.67 0.934857
Target:  5'- cCCCCGuGCCGGACG-UCCcaGACAu -3'
miRNA:   3'- cGGGGCuUGGUCUGCuAGGacCUGUu -5'
9244 5' -56.1 NC_002512.2 + 160821 0.67 0.933398
Target:  5'- cGCCCCGGcACCAGcaggcgggcggccgGCGG-CgCUGGGCGc -3'
miRNA:   3'- -CGGGGCU-UGGUC--------------UGCUaG-GACCUGUu -5'
9244 5' -56.1 NC_002512.2 + 112949 0.67 0.929913
Target:  5'- aGCCCgCGGACCGGGuCGAagucgaagCCggGGACGc -3'
miRNA:   3'- -CGGG-GCUUGGUCU-GCUa-------GGa-CCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.