miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9245 3' -57.6 NC_002512.2 + 210500 0.66 0.926617
Target:  5'- cGAGGCGaGGGcCCGAcGCgagcGCGAggccGCCGa -3'
miRNA:   3'- cUUCCGC-CUCuGGCU-CGa---CGCU----UGGC- -5'
9245 3' -57.6 NC_002512.2 + 134694 0.66 0.926617
Target:  5'- -cGGGCGcucGCCGGGCUGCccgacauccuggGGGCCGg -3'
miRNA:   3'- cuUCCGCcucUGGCUCGACG------------CUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 46737 0.66 0.926617
Target:  5'- cGgcGGCGGGGAagCGcGCgcagGgGAACCGg -3'
miRNA:   3'- -CuuCCGCCUCUg-GCuCGa---CgCUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 167 0.66 0.926617
Target:  5'- aGGAGGCggcagaGGAGGCCGgagGGC-GUGGGCUGc -3'
miRNA:   3'- -CUUCCG------CCUCUGGC---UCGaCGCUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 5254 0.66 0.926617
Target:  5'- -uAGGCcGAGGCCGcGGCgGCGAccCCGa -3'
miRNA:   3'- cuUCCGcCUCUGGC-UCGaCGCUu-GGC- -5'
9245 3' -57.6 NC_002512.2 + 229570 0.66 0.926617
Target:  5'- aGGAGGCggcagaGGAGGCCGgagGGC-GUGGGCUGc -3'
miRNA:   3'- -CUUCCG------CCUCUGGC---UCGaCGCUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 47653 0.66 0.926617
Target:  5'- uAAGGCGuGGGACgGGGCaucGUGGAUCa -3'
miRNA:   3'- cUUCCGC-CUCUGgCUCGa--CGCUUGGc -5'
9245 3' -57.6 NC_002512.2 + 112929 0.66 0.926617
Target:  5'- --cGGCGGcccgguGGCgcgCGAGCccGCGGACCGg -3'
miRNA:   3'- cuuCCGCCu-----CUG---GCUCGa-CGCUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 156837 0.66 0.926617
Target:  5'- cGAGGccuGCGGGGGCCGcuGCUGCcacACCu -3'
miRNA:   3'- -CUUC---CGCCUCUGGCu-CGACGcu-UGGc -5'
9245 3' -57.6 NC_002512.2 + 208381 0.66 0.926617
Target:  5'- cGAGGUGGc--CCGAcGCUGCGAGgcCCGc -3'
miRNA:   3'- cUUCCGCCucuGGCU-CGACGCUU--GGC- -5'
9245 3' -57.6 NC_002512.2 + 215302 0.66 0.926617
Target:  5'- --cGG-GGAGA-CGGGCUGCGGcgacuacggcACCGg -3'
miRNA:   3'- cuuCCgCCUCUgGCUCGACGCU----------UGGC- -5'
9245 3' -57.6 NC_002512.2 + 229553 0.66 0.926103
Target:  5'- -cGGGCGGGGcGCCggcggagGAGC-GCGcGCCGg -3'
miRNA:   3'- cuUCCGCCUC-UGG-------CUCGaCGCuUGGC- -5'
9245 3' -57.6 NC_002512.2 + 150 0.66 0.926103
Target:  5'- -cGGGCGGGGcGCCggcggagGAGC-GCGcGCCGg -3'
miRNA:   3'- cuUCCGCCUC-UGG-------CUCGaCGCuUGGC- -5'
9245 3' -57.6 NC_002512.2 + 88666 0.66 0.925068
Target:  5'- ---aGCGGGGACCGcccgaacccgccccGGCUGCGcuGCUGc -3'
miRNA:   3'- cuucCGCCUCUGGC--------------UCGACGCu-UGGC- -5'
9245 3' -57.6 NC_002512.2 + 228664 0.66 0.921376
Target:  5'- aGAGGCGGggaGGACgGGGCcG-GGGCCGc -3'
miRNA:   3'- cUUCCGCC---UCUGgCUCGaCgCUUGGC- -5'
9245 3' -57.6 NC_002512.2 + 87672 0.66 0.921376
Target:  5'- cGAAGGCGacgacgucGAGACCGAcgggacGCgcgGCGAcgcggagacGCCGc -3'
miRNA:   3'- -CUUCCGC--------CUCUGGCU------CGa--CGCU---------UGGC- -5'
9245 3' -57.6 NC_002512.2 + 155375 0.66 0.921376
Target:  5'- -cAGGCGG-GACCGcgaGGCUgGCGAGguCCu -3'
miRNA:   3'- cuUCCGCCuCUGGC---UCGA-CGCUU--GGc -5'
9245 3' -57.6 NC_002512.2 + 134409 0.66 0.921376
Target:  5'- cGgcGGCGGuu-CCGGGuCUGCGuGCCc -3'
miRNA:   3'- -CuuCCGCCucuGGCUC-GACGCuUGGc -5'
9245 3' -57.6 NC_002512.2 + 48496 0.66 0.920301
Target:  5'- --cGGCGGAGGCCaGGGCgcacgacgacgcGCGGcuGCUGa -3'
miRNA:   3'- cuuCCGCCUCUGG-CUCGa-----------CGCU--UGGC- -5'
9245 3' -57.6 NC_002512.2 + 227517 0.66 0.915914
Target:  5'- cGGGGgGGAGAguCCG-GCgGCGGACgGg -3'
miRNA:   3'- cUUCCgCCUCU--GGCuCGaCGCUUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.