miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9245 5' -59.1 NC_002512.2 + 191873 0.66 0.863213
Target:  5'- uUUUGUCUCgCgCAGuCCCCGagCGGCCg- -3'
miRNA:   3'- -AAGCAGAG-G-GUCuGGGGCa-GCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 1673 0.66 0.863213
Target:  5'- -cCGUCUCgCCcGGCCUCGaccgCGGCCUc -3'
miRNA:   3'- aaGCAGAG-GGuCUGGGGCa---GCUGGAa -5'
9245 5' -59.1 NC_002512.2 + 69257 0.66 0.863213
Target:  5'- gUCGUCcgcgUCCCGGAucuCCUCGaucagCGACCUg -3'
miRNA:   3'- aAGCAG----AGGGUCU---GGGGCa----GCUGGAa -5'
9245 5' -59.1 NC_002512.2 + 193920 0.66 0.855829
Target:  5'- aUCGcgUCCCGGACUCCGcugaCGGCCg- -3'
miRNA:   3'- aAGCagAGGGUCUGGGGCa---GCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 79851 0.66 0.848257
Target:  5'- gUCGUC-CCCGG-CCCCcUCGuCCUc -3'
miRNA:   3'- aAGCAGaGGGUCuGGGGcAGCuGGAa -5'
9245 5' -59.1 NC_002512.2 + 123410 0.66 0.848257
Target:  5'- -cCGUCggCCCuGGCCCCGuUCGugUUc -3'
miRNA:   3'- aaGCAGa-GGGuCUGGGGC-AGCugGAa -5'
9245 5' -59.1 NC_002512.2 + 195755 0.66 0.848257
Target:  5'- gUCGUCggCCGGAUCCUGggGACCa- -3'
miRNA:   3'- aAGCAGagGGUCUGGGGCagCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 118583 0.66 0.848257
Target:  5'- --gGUCagcuggUCCCAGACCCCGggcgucUGGCCg- -3'
miRNA:   3'- aagCAG------AGGGUCUGGGGCa-----GCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 136157 0.66 0.840504
Target:  5'- -cCGUC-CCCGu-CCCCGUCGAUCc- -3'
miRNA:   3'- aaGCAGaGGGUcuGGGGCAGCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 29617 0.66 0.840504
Target:  5'- cUCGUCgUCCUcGuCCCCGUCGucguCCUc -3'
miRNA:   3'- aAGCAG-AGGGuCuGGGGCAGCu---GGAa -5'
9245 5' -59.1 NC_002512.2 + 6162 0.66 0.832575
Target:  5'- --gGUCUCCCGGucguccuCCCCGUgcgagucgcCGGCCa- -3'
miRNA:   3'- aagCAGAGGGUCu------GGGGCA---------GCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 212017 0.66 0.832575
Target:  5'- -aCGUCcCCCGGGCCCUGcgCGAgCa- -3'
miRNA:   3'- aaGCAGaGGGUCUGGGGCa-GCUgGaa -5'
9245 5' -59.1 NC_002512.2 + 105084 0.66 0.832575
Target:  5'- --aGUCUCCCGG-CUCCGUCagcugGACCc- -3'
miRNA:   3'- aagCAGAGGGUCuGGGGCAG-----CUGGaa -5'
9245 5' -59.1 NC_002512.2 + 139103 0.67 0.824477
Target:  5'- aUCGUCgCCCGcgucACCUCGUUGGCCa- -3'
miRNA:   3'- aAGCAGaGGGUc---UGGGGCAGCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 215348 0.67 0.824477
Target:  5'- aUCGUg-CCCGG-CUCCGUCGACUc- -3'
miRNA:   3'- aAGCAgaGGGUCuGGGGCAGCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 186497 0.67 0.821192
Target:  5'- gUUCGUCcacuacgcggccgUCCGGGCCagCGUCGACCUc -3'
miRNA:   3'- -AAGCAGa------------GGGUCUGGg-GCAGCUGGAa -5'
9245 5' -59.1 NC_002512.2 + 5534 0.67 0.816217
Target:  5'- --gGUCUCCCGcccgcGACCCCGgcgCGGCg-- -3'
miRNA:   3'- aagCAGAGGGU-----CUGGGGCa--GCUGgaa -5'
9245 5' -59.1 NC_002512.2 + 201442 0.67 0.814546
Target:  5'- gUCGUCgcgaUCUCGGccucgaggugguCCCCGUCGGCCg- -3'
miRNA:   3'- aAGCAG----AGGGUCu-----------GGGGCAGCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 225469 0.67 0.807802
Target:  5'- --gGUCUaCCAGcaGCCgCCGUCGACCg- -3'
miRNA:   3'- aagCAGAgGGUC--UGG-GGCAGCUGGaa -5'
9245 5' -59.1 NC_002512.2 + 108478 0.67 0.802681
Target:  5'- -gCGUCUCCCuccacgccaggcgcGGCUCCGUcCGGCCg- -3'
miRNA:   3'- aaGCAGAGGGu-------------CUGGGGCA-GCUGGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.