Results 1 - 20 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 191873 | 0.66 | 0.863213 |
Target: 5'- uUUUGUCUCgCgCAGuCCCCGagCGGCCg- -3' miRNA: 3'- -AAGCAGAG-G-GUCuGGGGCa-GCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 1673 | 0.66 | 0.863213 |
Target: 5'- -cCGUCUCgCCcGGCCUCGaccgCGGCCUc -3' miRNA: 3'- aaGCAGAG-GGuCUGGGGCa---GCUGGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 69257 | 0.66 | 0.863213 |
Target: 5'- gUCGUCcgcgUCCCGGAucuCCUCGaucagCGACCUg -3' miRNA: 3'- aAGCAG----AGGGUCU---GGGGCa----GCUGGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 193920 | 0.66 | 0.855829 |
Target: 5'- aUCGcgUCCCGGACUCCGcugaCGGCCg- -3' miRNA: 3'- aAGCagAGGGUCUGGGGCa---GCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 79851 | 0.66 | 0.848257 |
Target: 5'- gUCGUC-CCCGG-CCCCcUCGuCCUc -3' miRNA: 3'- aAGCAGaGGGUCuGGGGcAGCuGGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 123410 | 0.66 | 0.848257 |
Target: 5'- -cCGUCggCCCuGGCCCCGuUCGugUUc -3' miRNA: 3'- aaGCAGa-GGGuCUGGGGC-AGCugGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 195755 | 0.66 | 0.848257 |
Target: 5'- gUCGUCggCCGGAUCCUGggGACCa- -3' miRNA: 3'- aAGCAGagGGUCUGGGGCagCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 118583 | 0.66 | 0.848257 |
Target: 5'- --gGUCagcuggUCCCAGACCCCGggcgucUGGCCg- -3' miRNA: 3'- aagCAG------AGGGUCUGGGGCa-----GCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 136157 | 0.66 | 0.840504 |
Target: 5'- -cCGUC-CCCGu-CCCCGUCGAUCc- -3' miRNA: 3'- aaGCAGaGGGUcuGGGGCAGCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 29617 | 0.66 | 0.840504 |
Target: 5'- cUCGUCgUCCUcGuCCCCGUCGucguCCUc -3' miRNA: 3'- aAGCAG-AGGGuCuGGGGCAGCu---GGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 6162 | 0.66 | 0.832575 |
Target: 5'- --gGUCUCCCGGucguccuCCCCGUgcgagucgcCGGCCa- -3' miRNA: 3'- aagCAGAGGGUCu------GGGGCA---------GCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 212017 | 0.66 | 0.832575 |
Target: 5'- -aCGUCcCCCGGGCCCUGcgCGAgCa- -3' miRNA: 3'- aaGCAGaGGGUCUGGGGCa-GCUgGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 105084 | 0.66 | 0.832575 |
Target: 5'- --aGUCUCCCGG-CUCCGUCagcugGACCc- -3' miRNA: 3'- aagCAGAGGGUCuGGGGCAG-----CUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 139103 | 0.67 | 0.824477 |
Target: 5'- aUCGUCgCCCGcgucACCUCGUUGGCCa- -3' miRNA: 3'- aAGCAGaGGGUc---UGGGGCAGCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 215348 | 0.67 | 0.824477 |
Target: 5'- aUCGUg-CCCGG-CUCCGUCGACUc- -3' miRNA: 3'- aAGCAgaGGGUCuGGGGCAGCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 186497 | 0.67 | 0.821192 |
Target: 5'- gUUCGUCcacuacgcggccgUCCGGGCCagCGUCGACCUc -3' miRNA: 3'- -AAGCAGa------------GGGUCUGGg-GCAGCUGGAa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 5534 | 0.67 | 0.816217 |
Target: 5'- --gGUCUCCCGcccgcGACCCCGgcgCGGCg-- -3' miRNA: 3'- aagCAGAGGGU-----CUGGGGCa--GCUGgaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 201442 | 0.67 | 0.814546 |
Target: 5'- gUCGUCgcgaUCUCGGccucgaggugguCCCCGUCGGCCg- -3' miRNA: 3'- aAGCAG----AGGGUCu-----------GGGGCAGCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 225469 | 0.67 | 0.807802 |
Target: 5'- --gGUCUaCCAGcaGCCgCCGUCGACCg- -3' miRNA: 3'- aagCAGAgGGUC--UGG-GGCAGCUGGaa -5' |
|||||||
9245 | 5' | -59.1 | NC_002512.2 | + | 108478 | 0.67 | 0.802681 |
Target: 5'- -gCGUCUCCCuccacgccaggcgcGGCUCCGUcCGGCCg- -3' miRNA: 3'- aaGCAGAGGGu-------------CUGGGGCA-GCUGGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home