miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 26715 0.66 0.773848
Target:  5'- gGCuGGCGuCCCUGAUGUgCGCGucGc -3'
miRNA:   3'- gCGuCCGCcGGGACUGCGgGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 131303 0.66 0.773848
Target:  5'- uGCAGcGCGgacgacccgccGCCCgaGGCGCCCGcCGGAu -3'
miRNA:   3'- gCGUC-CGC-----------CGGGa-CUGCGGGU-GCUUc -5'
9246 5' -61.6 NC_002512.2 + 29174 0.66 0.773848
Target:  5'- cCGcCGGGCGGCagCCcGACGCCaCcCGAGa -3'
miRNA:   3'- -GC-GUCCGCCG--GGaCUGCGG-GuGCUUc -5'
9246 5' -61.6 NC_002512.2 + 140060 0.66 0.773848
Target:  5'- uGCAGcGCGGUCUcGACGUCCucuCGGc- -3'
miRNA:   3'- gCGUC-CGCCGGGaCUGCGGGu--GCUuc -5'
9246 5' -61.6 NC_002512.2 + 113726 0.66 0.772971
Target:  5'- aCGCGGGCGGCgaUCUGcgggccgaggugcGCGgUCAUGGAGc -3'
miRNA:   3'- -GCGUCCGCCG--GGAC-------------UGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 18915 0.66 0.772971
Target:  5'- aCGCAGGCgcgacacagGGCCCgGACGaCCUcguuggccucgggGCGGAc -3'
miRNA:   3'- -GCGUCCG---------CCGGGaCUGC-GGG-------------UGCUUc -5'
9246 5' -61.6 NC_002512.2 + 43239 0.66 0.765029
Target:  5'- -cCGGaGCugGGCCCaGugGCCCGCGGGc -3'
miRNA:   3'- gcGUC-CG--CCGGGaCugCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 229595 0.66 0.765029
Target:  5'- gCGUGGGCuGCCCUGGCcCCC-CGucGc -3'
miRNA:   3'- -GCGUCCGcCGGGACUGcGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 17898 0.66 0.765029
Target:  5'- gGCGgcGGCGGCCCcgaggacGACGgCCGCGu-- -3'
miRNA:   3'- gCGU--CCGCCGGGa------CUGCgGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 227754 0.66 0.765029
Target:  5'- gGgAGGCGacgaccgaacGCUC-GACGCCCGCGAc- -3'
miRNA:   3'- gCgUCCGC----------CGGGaCUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 197732 0.66 0.765029
Target:  5'- uGCGGGaGGCCCUGgagaagauGCGCgCCAUGu-- -3'
miRNA:   3'- gCGUCCgCCGGGAC--------UGCG-GGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 95572 0.66 0.765029
Target:  5'- cCGUcGGCgccGGCCCcggcGACGUCCuCGAAGa -3'
miRNA:   3'- -GCGuCCG---CCGGGa---CUGCGGGuGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 120879 0.66 0.765029
Target:  5'- cCGCAGGaCGacGCCgCcGGCGCCgACGAGc -3'
miRNA:   3'- -GCGUCC-GC--CGG-GaCUGCGGgUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 192 0.66 0.765029
Target:  5'- gCGUGGGCuGCCCUGGCcCCC-CGucGc -3'
miRNA:   3'- -GCGUCCGcCGGGACUGcGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 13632 0.66 0.763252
Target:  5'- uGCGGGCGGCgcaCCUGAUGacgaccgucucgCCGCGGc- -3'
miRNA:   3'- gCGUCCGCCG---GGACUGCg-----------GGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 50572 0.66 0.756106
Target:  5'- uGCAGGaucuGCCCgccucGcCGCCCGCGGAc -3'
miRNA:   3'- gCGUCCgc--CGGGa----CuGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 141443 0.66 0.756106
Target:  5'- cCGCcuGCuGGUCCggGACGCCUGCGGu- -3'
miRNA:   3'- -GCGucCG-CCGGGa-CUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 100680 0.66 0.756106
Target:  5'- aGUAGGUGcuGCUCUGcaGCGCCCGCa--- -3'
miRNA:   3'- gCGUCCGC--CGGGAC--UGCGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 54053 0.66 0.756106
Target:  5'- gGCgAGGCGGCag-GAgGCgCCACGGAc -3'
miRNA:   3'- gCG-UCCGCCGggaCUgCG-GGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 155384 0.66 0.756106
Target:  5'- gGC-GGCGGCgCCggcgGGCGaUCGCGGAGg -3'
miRNA:   3'- gCGuCCGCCG-GGa---CUGCgGGUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.