miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 221594 0.66 0.91871
Target:  5'- -gACCcGGAgggGGGUCGGUGGACGGc- -3'
miRNA:   3'- agUGGuUCUa--CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 113271 0.66 0.91871
Target:  5'- uUCACgAAGggGGGCCacaGGCGGG-GGUc -3'
miRNA:   3'- -AGUGgUUCuaCCUGG---CCGCCUgCCAc -5'
9249 5' -57.2 NC_002512.2 + 100331 0.66 0.91871
Target:  5'- gCGCCucg--GGACUGGCGGGCGc-- -3'
miRNA:   3'- aGUGGuucuaCCUGGCCGCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 82364 0.66 0.917615
Target:  5'- gCGCCucgcgccgGGAUCGGCGGgACGGg- -3'
miRNA:   3'- aGUGGuucua---CCUGGCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 118963 0.67 0.913151
Target:  5'- cCACCGAGAgcgcGGcCCuGGUG-ACGGUGg -3'
miRNA:   3'- aGUGGUUCUa---CCuGG-CCGCcUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 158538 0.67 0.913151
Target:  5'- gUCACCcggcuGGUGGACCuGCuGGugGGc- -3'
miRNA:   3'- -AGUGGuu---CUACCUGGcCG-CCugCCac -5'
9249 5' -57.2 NC_002512.2 + 176 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 229579 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 224122 0.67 0.907373
Target:  5'- -gACCAucucGGccGUGGACCcgcgccgggaGGCGGACGcGUGa -3'
miRNA:   3'- agUGGU----UC--UACCUGG----------CCGCCUGC-CAC- -5'
9249 5' -57.2 NC_002512.2 + 36922 0.67 0.907373
Target:  5'- -gACCAAGcgGGAggacCCGGgGGACGa-- -3'
miRNA:   3'- agUGGUUCuaCCU----GGCCgCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 123742 0.67 0.907373
Target:  5'- cCugCGGGGUcGGACCuGGCGGAgcuccuCGGg- -3'
miRNA:   3'- aGugGUUCUA-CCUGG-CCGCCU------GCCac -5'
9249 5' -57.2 NC_002512.2 + 133432 0.67 0.901379
Target:  5'- cCGCgCGuu-UGGuuCCGGgGGACGGUGg -3'
miRNA:   3'- aGUG-GUucuACCu-GGCCgCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 147393 0.67 0.901379
Target:  5'- aCGCCAugcAGA-GGACCGGCGucaaACGGc- -3'
miRNA:   3'- aGUGGU---UCUaCCUGGCCGCc---UGCCac -5'
9249 5' -57.2 NC_002512.2 + 116758 0.67 0.900768
Target:  5'- -gACCAGGccagccgcuguucGUGGACgGGCGG-CGGa- -3'
miRNA:   3'- agUGGUUC-------------UACCUGgCCGCCuGCCac -5'
9249 5' -57.2 NC_002512.2 + 86595 0.67 0.89517
Target:  5'- cUCGCCGcGAUGGuCgGGgGGAgCGGUc -3'
miRNA:   3'- -AGUGGUuCUACCuGgCCgCCU-GCCAc -5'
9249 5' -57.2 NC_002512.2 + 165968 0.67 0.89517
Target:  5'- uUCACCAAGcUGcGGCgGgGCGGuCGGUu -3'
miRNA:   3'- -AGUGGUUCuAC-CUGgC-CGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 104605 0.67 0.89517
Target:  5'- aCAUCAggggcuccAGGUGcGCCaGGCGGACGGa- -3'
miRNA:   3'- aGUGGU--------UCUACcUGG-CCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 87809 0.67 0.88875
Target:  5'- gUCGUCGAGgcGGGCgGGCGGuCGGa- -3'
miRNA:   3'- -AGUGGUUCuaCCUGgCCGCCuGCCac -5'
9249 5' -57.2 NC_002512.2 + 136192 0.67 0.888096
Target:  5'- gUCGCCGGGAUcGcgucgacGCCGGCGGcCuGGUGc -3'
miRNA:   3'- -AGUGGUUCUAcC-------UGGCCGCCuG-CCAC- -5'
9249 5' -57.2 NC_002512.2 + 6448 0.68 0.882121
Target:  5'- gCGCCGAGAcagGGGUCGGCcGGcACGGUc -3'
miRNA:   3'- aGUGGUUCUa--CCUGGCCG-CC-UGCCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.