miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 3' -57.3 NC_002512.2 + 171809 0.66 0.936436
Target:  5'- -cGGCgCGCGcUCCUGCUGcccGGCAUCc- -3'
miRNA:   3'- gaCUGgGUGC-AGGGCGAC---UCGUAGcu -5'
9252 3' -57.3 NC_002512.2 + 73709 0.66 0.936436
Target:  5'- aUGACCaugagCugGUCgCGCUcGAGCAgCGAc -3'
miRNA:   3'- gACUGG-----GugCAGgGCGA-CUCGUaGCU- -5'
9252 3' -57.3 NC_002512.2 + 199017 0.66 0.936436
Target:  5'- aUGGCCUccuGCGUCaggaaCCGCgGcGCGUCGAa -3'
miRNA:   3'- gACUGGG---UGCAG-----GGCGaCuCGUAGCU- -5'
9252 3' -57.3 NC_002512.2 + 217926 0.66 0.936436
Target:  5'- gUGGCCCGCGUCuUCGUggggaccgGGGCGggGAa -3'
miRNA:   3'- gACUGGGUGCAG-GGCGa-------CUCGUagCU- -5'
9252 3' -57.3 NC_002512.2 + 220850 0.66 0.936436
Target:  5'- gCUGugUCGCGUCuacgucguCCGCgGGGCcUCGGc -3'
miRNA:   3'- -GACugGGUGCAG--------GGCGaCUCGuAGCU- -5'
9252 3' -57.3 NC_002512.2 + 50410 0.66 0.935966
Target:  5'- uCUGGCCaUugGcucCCCGaacguucuaagaaCUGAGCGUCGAc -3'
miRNA:   3'- -GACUGG-GugCa--GGGC-------------GACUCGUAGCU- -5'
9252 3' -57.3 NC_002512.2 + 43254 0.66 0.933583
Target:  5'- gUGGCCCGCGggcagcgagcuggucUCCUGgaGGGgGUCGu -3'
miRNA:   3'- gACUGGGUGC---------------AGGGCgaCUCgUAGCu -5'
9252 3' -57.3 NC_002512.2 + 30312 0.66 0.931637
Target:  5'- -cGACCCGCGguaCCGCacGAGUcuguucAUCGAc -3'
miRNA:   3'- gaCUGGGUGCag-GGCGa-CUCG------UAGCU- -5'
9252 3' -57.3 NC_002512.2 + 102479 0.66 0.931637
Target:  5'- aUGGCCCAgGcUCCC-CUcGGCGUCGu -3'
miRNA:   3'- gACUGGGUgC-AGGGcGAcUCGUAGCu -5'
9252 3' -57.3 NC_002512.2 + 75363 0.66 0.931637
Target:  5'- -cGGCCCGaacCG-CCgGCUGAGuCAUCGc -3'
miRNA:   3'- gaCUGGGU---GCaGGgCGACUC-GUAGCu -5'
9252 3' -57.3 NC_002512.2 + 97348 0.66 0.931637
Target:  5'- -aGGCCgACGgcgccgCCCGCgGAGCGggGAc -3'
miRNA:   3'- gaCUGGgUGCa-----GGGCGaCUCGUagCU- -5'
9252 3' -57.3 NC_002512.2 + 121964 0.66 0.931637
Target:  5'- gCUGACCCGgGUcCCCGCccgccGGCGggaCGAg -3'
miRNA:   3'- -GACUGGGUgCA-GGGCGac---UCGUa--GCU- -5'
9252 3' -57.3 NC_002512.2 + 99525 0.66 0.931637
Target:  5'- cCUGGCCgCGCGugUCCCGCUcGAuGCAgCGc -3'
miRNA:   3'- -GACUGG-GUGC--AGGGCGA-CU-CGUaGCu -5'
9252 3' -57.3 NC_002512.2 + 128268 0.66 0.931637
Target:  5'- -cGACUCGCGUCCCgGCgccGGGC--CGAc -3'
miRNA:   3'- gaCUGGGUGCAGGG-CGa--CUCGuaGCU- -5'
9252 3' -57.3 NC_002512.2 + 161039 0.66 0.926617
Target:  5'- -cGACCCGC-UCCUGCgGAcGCA-CGAu -3'
miRNA:   3'- gaCUGGGUGcAGGGCGaCU-CGUaGCU- -5'
9252 3' -57.3 NC_002512.2 + 153341 0.66 0.926617
Target:  5'- -gGGCCgguccgggucggCGgGUCCCGCUGGGCugggCGGc -3'
miRNA:   3'- gaCUGG------------GUgCAGGGCGACUCGua--GCU- -5'
9252 3' -57.3 NC_002512.2 + 219297 0.66 0.921376
Target:  5'- gUGGCCCGCuucGUCguCCGCggccacggggaGAGCGUCGGc -3'
miRNA:   3'- gACUGGGUG---CAG--GGCGa----------CUCGUAGCU- -5'
9252 3' -57.3 NC_002512.2 + 14441 0.66 0.921376
Target:  5'- aUGACCCGC-UCCCGg-GGGCugaCGAu -3'
miRNA:   3'- gACUGGGUGcAGGGCgaCUCGua-GCU- -5'
9252 3' -57.3 NC_002512.2 + 63410 0.66 0.915914
Target:  5'- -cGACCCGCgGUCCCGCcGuccccGCccUCGAg -3'
miRNA:   3'- gaCUGGGUG-CAGGGCGaCu----CGu-AGCU- -5'
9252 3' -57.3 NC_002512.2 + 69769 0.66 0.915914
Target:  5'- cCUcGCCCAgGUCCUGCuccaccgucUGGGCGUCc- -3'
miRNA:   3'- -GAcUGGGUgCAGGGCG---------ACUCGUAGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.