miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 122262 0.73 0.28334
Target:  5'- uCCCCGGcGGCCgCGGGGacguCCUGGAgCCCGu -3'
miRNA:   3'- -GGGGCU-CUGGgGCCCU----GGGCCU-GGGC- -5'
9252 5' -65.7 NC_002512.2 + 80841 0.73 0.277468
Target:  5'- gCCCCGuAGgcgaGCCUCGGGACgCgGGGCUCGg -3'
miRNA:   3'- -GGGGC-UC----UGGGGCCCUG-GgCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 105087 0.76 0.183616
Target:  5'- cUCCCG--GCUCCGucagcuGGACCCGGACCCGg -3'
miRNA:   3'- -GGGGCucUGGGGC------CCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 79679 0.79 0.121745
Target:  5'- uCCCCGGcGGCCuCCGGGuuCCCGGAUCCc -3'
miRNA:   3'- -GGGGCU-CUGG-GGCCCu-GGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 118525 0.72 0.331861
Target:  5'- uCCUCGAG-CCCCGGGucguccucgugcgcGCCCgGGACgCCa -3'
miRNA:   3'- -GGGGCUCuGGGGCCC--------------UGGG-CCUG-GGc -5'
9252 5' -65.7 NC_002512.2 + 121443 0.72 0.313539
Target:  5'- gCCCGGGGagggaccCCCCGGccCCCGGcCCCGg -3'
miRNA:   3'- gGGGCUCU-------GGGGCCcuGGGCCuGGGC- -5'
9252 5' -65.7 NC_002512.2 + 127525 0.73 0.266014
Target:  5'- gCUCCaGGACCuCCGGacgaccgacGCCCGGACCCGg -3'
miRNA:   3'- -GGGGcUCUGG-GGCCc--------UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 3524 0.8 0.105838
Target:  5'- aCCCGAG-CCCgCGGGGCCCGaaGCCCGg -3'
miRNA:   3'- gGGGCUCuGGG-GCCCUGGGCc-UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 102059 0.72 0.307814
Target:  5'- gCCgCCGAcGACcuCCCGGaGCCgGGACCCGa -3'
miRNA:   3'- -GG-GGCU-CUG--GGGCCcUGGgCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 103497 0.8 0.103385
Target:  5'- gCCCGGGGCCCCGGGcgcucuCCCGGGCggCCa -3'
miRNA:   3'- gGGGCUCUGGGGCCCu-----GGGCCUG--GGc -5'
9252 5' -65.7 NC_002512.2 + 130133 0.73 0.266014
Target:  5'- gCCCGGGguggugucgcgGCCgCGGGGCCCGGcggcgggccgGCCCGc -3'
miRNA:   3'- gGGGCUC-----------UGGgGCCCUGGGCC----------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 2782 0.73 0.294769
Target:  5'- cCCCCGucugagcccGACCCggccggcggccggCGGGACCCGGcgcgggcgcggGCCCGg -3'
miRNA:   3'- -GGGGCu--------CUGGG-------------GCCCUGGGCC-----------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 12114 0.74 0.244259
Target:  5'- -gCCGcGACCCCGGcGACggggaCGGGCCCGg -3'
miRNA:   3'- ggGGCuCUGGGGCC-CUGg----GCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 70503 0.76 0.187765
Target:  5'- gCCCCGAcGCCgCGGGACCCGcGAaugggacgcCCCGa -3'
miRNA:   3'- -GGGGCUcUGGgGCCCUGGGC-CU---------GGGC- -5'
9252 5' -65.7 NC_002512.2 + 72825 0.77 0.156789
Target:  5'- aCCCCG-GACCCCGGGACgcccgccuugCCGGGUCCu -3'
miRNA:   3'- -GGGGCuCUGGGGCCCUG----------GGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 118649 0.78 0.143098
Target:  5'- gCCCGAcGCUCCGGGcGCCCGGccGCCCGu -3'
miRNA:   3'- gGGGCUcUGGGGCCC-UGGGCC--UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 121363 0.72 0.339951
Target:  5'- gCCgUCGGGuCCCCGgccggucGGGCgCCGGGCCCGg -3'
miRNA:   3'- -GG-GGCUCuGGGGC-------CCUG-GGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 69127 0.72 0.33387
Target:  5'- gCUCCGGGACCuCCGu-GCCCGGGgCCGg -3'
miRNA:   3'- -GGGGCUCUGG-GGCccUGGGCCUgGGC- -5'
9252 5' -65.7 NC_002512.2 + 2329 0.72 0.320644
Target:  5'- gUCCgGAGGCCUCGGu-CgCGGACCCGc -3'
miRNA:   3'- -GGGgCUCUGGGGCCcuGgGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 29793 0.72 0.31418
Target:  5'- aCCCCGGcGACCCCGcgacGGGCgCGGGCuUCGg -3'
miRNA:   3'- -GGGGCU-CUGGGGC----CCUGgGCCUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.