miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 105092 0.66 0.665674
Target:  5'- -gUCGGGucgacgugucuCCCCGGGuCCCGGcaGCCCu -3'
miRNA:   3'- ggGGCUCu----------GGGGCCCuGGGCC--UGGGc -5'
9252 5' -65.7 NC_002512.2 + 192813 0.66 0.665674
Target:  5'- aCCCGGGGCgaucgcaCCGGGGCCagguGGACgaGg -3'
miRNA:   3'- gGGGCUCUGg------GGCCCUGGg---CCUGggC- -5'
9252 5' -65.7 NC_002512.2 + 209249 0.66 0.665674
Target:  5'- gUCCCG-GGCCCgcuCGGcGAaCCGGACCUc -3'
miRNA:   3'- -GGGGCuCUGGG---GCC-CUgGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 210214 0.66 0.665674
Target:  5'- gUCCGAGA---CGGaGACgCGGACCCGa -3'
miRNA:   3'- gGGGCUCUgggGCC-CUGgGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 51027 0.66 0.665674
Target:  5'- aUCUCGAgguucagaguGACCCCGuGaagagaGCUCGGGCCCGg -3'
miRNA:   3'- -GGGGCU----------CUGGGGCcC------UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 60331 0.66 0.665674
Target:  5'- aCgCCGgcgaAGGCCacgccgCCGGGcaGCCgGGACCCGu -3'
miRNA:   3'- -GgGGC----UCUGG------GGCCC--UGGgCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 123954 0.66 0.665674
Target:  5'- gCCggCGGGACCCuCGGGGCuCUGGcguUCCGu -3'
miRNA:   3'- gGG--GCUCUGGG-GCCCUG-GGCCu--GGGC- -5'
9252 5' -65.7 NC_002512.2 + 88496 0.66 0.665674
Target:  5'- aUCCCGAGugC--GGGAUCgCGGACgCGa -3'
miRNA:   3'- -GGGGCUCugGggCCCUGG-GCCUGgGC- -5'
9252 5' -65.7 NC_002512.2 + 112771 0.66 0.665674
Target:  5'- gCCgCGGGGCCCCGugccgcuGugCCGGGUCCa -3'
miRNA:   3'- -GGgGCUCUGGGGCc------CugGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 222156 0.66 0.664765
Target:  5'- cCCCCGAGGaccgcuaUCCCGacgccuacuCCCGGGCCgCGg -3'
miRNA:   3'- -GGGGCUCU-------GGGGCccu------GGGCCUGG-GC- -5'
9252 5' -65.7 NC_002512.2 + 16361 0.66 0.656579
Target:  5'- gCUCCGAGggcACCCC--GACCCGGacgacGCCCu -3'
miRNA:   3'- -GGGGCUC---UGGGGccCUGGGCC-----UGGGc -5'
9252 5' -65.7 NC_002512.2 + 191794 0.66 0.656579
Target:  5'- uCgUCGucuuuCCCCGGGACaCCGGGCaCUGa -3'
miRNA:   3'- -GgGGCucu--GGGGCCCUG-GGCCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 36078 0.66 0.656579
Target:  5'- aCCCCGAagcggcgcGACCaauGGGCCaGGGCCCa -3'
miRNA:   3'- -GGGGCU--------CUGGggcCCUGGgCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 39578 0.66 0.656579
Target:  5'- cCCCCagcaGGAUCaCGGGAaaCUCGGACUCGg -3'
miRNA:   3'- -GGGGc---UCUGGgGCCCU--GGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 192187 0.66 0.656579
Target:  5'- gUCCUGc-GCCgCGgcuggggaGGACCCGGACCCu -3'
miRNA:   3'- -GGGGCucUGGgGC--------CCUGGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 121927 0.66 0.656579
Target:  5'- --aCGAGGCggCGGcGGuCCCGGACCCGc -3'
miRNA:   3'- gggGCUCUGggGCC-CU-GGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 195560 0.66 0.656579
Target:  5'- cUCCCGGGuCgCCGGGuCCCugaaguGGACCg- -3'
miRNA:   3'- -GGGGCUCuGgGGCCCuGGG------CCUGGgc -5'
9252 5' -65.7 NC_002512.2 + 226151 0.66 0.656579
Target:  5'- cUCCCGAuccACCCUGGGGuacgagUCCG-ACCCGg -3'
miRNA:   3'- -GGGGCUc--UGGGGCCCU------GGGCcUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 53600 0.66 0.656579
Target:  5'- -gCUGAuGCUCCaGGcCCUGGACCCGa -3'
miRNA:   3'- ggGGCUcUGGGGcCCuGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 4479 0.66 0.656579
Target:  5'- aCCCGAccccGACCCCGGcg-CCGucCCCGa -3'
miRNA:   3'- gGGGCU----CUGGGGCCcugGGCcuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.