miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9256 3' -56.5 NC_002512.2 + 221152 0.66 0.968295
Target:  5'- cCCGU--CGUCGacGGGCgGGCG-CGCGCGg -3'
miRNA:   3'- -GGUAucGCAGC--CUUG-CCGCaGCGCGC- -5'
9256 3' -56.5 NC_002512.2 + 80764 0.66 0.968295
Target:  5'- uCCcgGGgGUCcucgcggcucgaggaGGAGCGGCGcgaggaggaggagCGCGCGc -3'
miRNA:   3'- -GGuaUCgCAG---------------CCUUGCCGCa------------GCGCGC- -5'
9256 3' -56.5 NC_002512.2 + 2799 0.66 0.968295
Target:  5'- cCCGgccGGCGgccggCGGGAccCGGCGcggGCGCGg -3'
miRNA:   3'- -GGUa--UCGCa----GCCUU--GCCGCag-CGCGC- -5'
9256 3' -56.5 NC_002512.2 + 94945 0.66 0.968295
Target:  5'- ---cAGCGUCcGGGCGGCcUCGCucGCGu -3'
miRNA:   3'- gguaUCGCAGcCUUGCCGcAGCG--CGC- -5'
9256 3' -56.5 NC_002512.2 + 153383 0.66 0.968295
Target:  5'- --cUGGCGgucCGGAGCGaCGUggaGCGCGg -3'
miRNA:   3'- gguAUCGCa--GCCUUGCcGCAg--CGCGC- -5'
9256 3' -56.5 NC_002512.2 + 158684 0.66 0.968295
Target:  5'- aUCAUGGCcgGcCGGGACGGgGagGUGCc -3'
miRNA:   3'- -GGUAUCG--CaGCCUUGCCgCagCGCGc -5'
9256 3' -56.5 NC_002512.2 + 169070 0.66 0.968295
Target:  5'- ---gGGCuccgCGGcGGCGGCGUCGCGg- -3'
miRNA:   3'- gguaUCGca--GCC-UUGCCGCAGCGCgc -5'
9256 3' -56.5 NC_002512.2 + 218895 0.66 0.968295
Target:  5'- cUCAUcGCGcgccacgCGGGGCGGC-UCGUGCc -3'
miRNA:   3'- -GGUAuCGCa------GCCUUGCCGcAGCGCGc -5'
9256 3' -56.5 NC_002512.2 + 42496 0.66 0.968295
Target:  5'- uUAUAGCG-CGGGG-GGaCGUCGCGa- -3'
miRNA:   3'- gGUAUCGCaGCCUUgCC-GCAGCGCgc -5'
9256 3' -56.5 NC_002512.2 + 211917 0.66 0.968004
Target:  5'- gUCGUcgAGCGUCGGGACcccgacgGGaCGUC-CGUGg -3'
miRNA:   3'- -GGUA--UCGCAGCCUUG-------CC-GCAGcGCGC- -5'
9256 3' -56.5 NC_002512.2 + 95243 0.66 0.965301
Target:  5'- uCCGgagggGGCGUCcGGAgGGC--CGCGCGg -3'
miRNA:   3'- -GGUa----UCGCAGcCUUgCCGcaGCGCGC- -5'
9256 3' -56.5 NC_002512.2 + 67972 0.66 0.965301
Target:  5'- gCCGUGGCGUccgcCGGAggAgGGCcg-GCGCGa -3'
miRNA:   3'- -GGUAUCGCA----GCCU--UgCCGcagCGCGC- -5'
9256 3' -56.5 NC_002512.2 + 10998 0.66 0.965301
Target:  5'- gCGUGGCG-CGcGAugagggcgcgcACGGCGUCgGUGCc -3'
miRNA:   3'- gGUAUCGCaGC-CU-----------UGCCGCAG-CGCGc -5'
9256 3' -56.5 NC_002512.2 + 81893 0.66 0.965301
Target:  5'- gCCGUGGUGUacucGCGGagGUCGUGCGc -3'
miRNA:   3'- -GGUAUCGCAgccuUGCCg-CAGCGCGC- -5'
9256 3' -56.5 NC_002512.2 + 104664 0.66 0.965301
Target:  5'- aUCAU-GCGcUgGGAGCGGCGUuccuccucCGCGUc -3'
miRNA:   3'- -GGUAuCGC-AgCCUUGCCGCA--------GCGCGc -5'
9256 3' -56.5 NC_002512.2 + 174804 0.66 0.965301
Target:  5'- gCCA-AGUGUCGaaaucGGGCGaGCGgUCGCGCc -3'
miRNA:   3'- -GGUaUCGCAGC-----CUUGC-CGC-AGCGCGc -5'
9256 3' -56.5 NC_002512.2 + 154838 0.66 0.965301
Target:  5'- -aGUAGUGUCGGAggggGCaGCGUCcauCGUGg -3'
miRNA:   3'- ggUAUCGCAGCCU----UGcCGCAGc--GCGC- -5'
9256 3' -56.5 NC_002512.2 + 112135 0.66 0.965301
Target:  5'- gCAUGGCG-CGGAAgacgaGGCgGUCGacgGCGa -3'
miRNA:   3'- gGUAUCGCaGCCUUg----CCG-CAGCg--CGC- -5'
9256 3' -56.5 NC_002512.2 + 89406 0.66 0.965301
Target:  5'- gCCAgguucGCG-CGGAACcaggccucgGGCGUCG-GCGg -3'
miRNA:   3'- -GGUau---CGCaGCCUUG---------CCGCAGCgCGC- -5'
9256 3' -56.5 NC_002512.2 + 161841 0.66 0.965301
Target:  5'- aCGaGGCuucCGGAcACGGCGUCG-GCGg -3'
miRNA:   3'- gGUaUCGca-GCCU-UGCCGCAGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.