Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9258 | 3' | -54.7 | NC_002512.2 | + | 108900 | 0.66 | 0.975993 |
Target: 5'- uGCcGUCGGGGccCGuucGCCGgUGCUGCu -3' miRNA: 3'- -CGuCAGCCUCuaGCu--CGGC-ACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 135317 | 0.66 | 0.975993 |
Target: 5'- gGCGGUCcccGAGGUCGgcgucAGCCGcgccggggUGCUGCu -3' miRNA: 3'- -CGUCAGc--CUCUAGC-----UCGGC--------ACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 18676 | 0.66 | 0.980494 |
Target: 5'- --cGUCGGAGAggaaGAGCuCGUGg-GCGg -3' miRNA: 3'- cguCAGCCUCUag--CUCG-GCACgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 26663 | 0.7 | 0.869766 |
Target: 5'- -aGGUCGGGGGcgggcUCGAagcggcagacguacGCCGUGCUgGCGg -3' miRNA: 3'- cgUCAGCCUCU-----AGCU--------------CGGCACGA-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 89425 | 0.66 | 0.980494 |
Target: 5'- gGCGGcgugaCGGAGAgguggcgCGAGCUGUGUcggaagGCGa -3' miRNA: 3'- -CGUCa----GCCUCUa------GCUCGGCACGa-----UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 80012 | 0.67 | 0.957995 |
Target: 5'- gGCAGcCGGAGccggaCGAGgCGUcGCUGCu -3' miRNA: 3'- -CGUCaGCCUCua---GCUCgGCA-CGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 219885 | 0.67 | 0.957995 |
Target: 5'- cGgGGUCGGAGA-CGAGCCGaccGCc--- -3' miRNA: 3'- -CgUCAGCCUCUaGCUCGGCa--CGaugc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 130227 | 0.66 | 0.973477 |
Target: 5'- gGCGG-CGGGGAaccUCuGGGCCccggcGUGCUugGu -3' miRNA: 3'- -CGUCaGCCUCU---AG-CUCGG-----CACGAugC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 128839 | 0.66 | 0.980494 |
Target: 5'- cGCAGcugcaccgcUCGGGcgccGcgCGGGCCcugGUGCUGCGc -3' miRNA: 3'- -CGUC---------AGCCU----CuaGCUCGG---CACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 118915 | 0.66 | 0.980494 |
Target: 5'- cGCuGUgGGAGAagGGGgaCGUGCUgACGg -3' miRNA: 3'- -CGuCAgCCUCUagCUCg-GCACGA-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 176448 | 0.68 | 0.95195 |
Target: 5'- cGCGGUCGGGGuGUCGGGuuCCGcgGCUcucuucuccuggaugGCGg -3' miRNA: 3'- -CGUCAGCCUC-UAGCUC--GGCa-CGA---------------UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 188917 | 0.68 | 0.950352 |
Target: 5'- cGCGGUCGGAGAguccCGguGGCgGgGCgcgGCGg -3' miRNA: 3'- -CGUCAGCCUCUa---GC--UCGgCaCGa--UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 178430 | 0.72 | 0.773439 |
Target: 5'- uGCAGUUGGcGGAUCGGGUCG-GC-GCGu -3' miRNA: 3'- -CGUCAGCC-UCUAGCUCGGCaCGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 184530 | 0.72 | 0.773439 |
Target: 5'- aGCAGUCGcGGGGUC-AGCCG-GCggcGCGg -3' miRNA: 3'- -CGUCAGC-CUCUAGcUCGGCaCGa--UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 223916 | 0.71 | 0.833829 |
Target: 5'- cGCGGgCGaGAGGUCGAGCCGg---ACGg -3' miRNA: 3'- -CGUCaGC-CUCUAGCUCGGCacgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 129515 | 0.72 | 0.791413 |
Target: 5'- -aAGUCGGgagccgcguacaGGA-CGAcGCCGUGCUGCGu -3' miRNA: 3'- cgUCAGCC------------UCUaGCU-CGGCACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 168715 | 0.7 | 0.8712 |
Target: 5'- cGCcGUCGGGGAgcUCGugcccuccuugcaGGCCGUGCagGCGc -3' miRNA: 3'- -CGuCAGCCUCU--AGC-------------UCGGCACGa-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 227610 | 0.69 | 0.910877 |
Target: 5'- aGCGGcCGGAGggCGGGCgGcgGCgGCGa -3' miRNA: 3'- -CGUCaGCCUCuaGCUCGgCa-CGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 128652 | 0.68 | 0.937239 |
Target: 5'- -gGGcCgGGGGAUCGAGCUccuccUGCUGCGg -3' miRNA: 3'- cgUCaG-CCUCUAGCUCGGc----ACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 208589 | 0.68 | 0.937239 |
Target: 5'- cGCAG-CGGguccgggacgAGGUCGAGguuCCGUGCUGuCGu -3' miRNA: 3'- -CGUCaGCC----------UCUAGCUC---GGCACGAU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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