Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9258 | 3' | -54.7 | NC_002512.2 | + | 82031 | 0.68 | 0.946203 |
Target: 5'- -gGGUCGG-GGUCGcGCCG-GCgGCGg -3' miRNA: 3'- cgUCAGCCuCUAGCuCGGCaCGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 3802 | 0.68 | 0.946203 |
Target: 5'- aGCAGUCccGAGAgCGAGCCGUcg-ACGg -3' miRNA: 3'- -CGUCAGc-CUCUaGCUCGGCAcgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 23472 | 0.68 | 0.946203 |
Target: 5'- cGCA--CGGAGAUgaugcCGAGCaugcugGUGCUGCGg -3' miRNA: 3'- -CGUcaGCCUCUA-----GCUCGg-----CACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 36582 | 0.68 | 0.946203 |
Target: 5'- gGCGGU-GGAGAccuccaggaGAGCC-UGCUGCGa -3' miRNA: 3'- -CGUCAgCCUCUag-------CUCGGcACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 158359 | 0.68 | 0.941833 |
Target: 5'- aCAGUCGccuuuUCGGGCCGUGUUGuCGa -3' miRNA: 3'- cGUCAGCcucu-AGCUCGGCACGAU-GC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 93603 | 0.68 | 0.937709 |
Target: 5'- cGUGGUCGGGGAagaacggccguuggaCGGGCgCGUGCU-CGg -3' miRNA: 3'- -CGUCAGCCUCUa--------------GCUCG-GCACGAuGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 128652 | 0.68 | 0.937239 |
Target: 5'- -gGGcCgGGGGAUCGAGCUccuccUGCUGCGg -3' miRNA: 3'- cgUCaG-CCUCUAGCUCGGc----ACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 208589 | 0.68 | 0.937239 |
Target: 5'- cGCAG-CGGguccgggacgAGGUCGAGguuCCGUGCUGuCGu -3' miRNA: 3'- -CGUCaGCC----------UCUAGCUC---GGCACGAU-GC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 227610 | 0.69 | 0.910877 |
Target: 5'- aGCGGcCGGAGggCGGGCgGcgGCgGCGa -3' miRNA: 3'- -CGUCaGCCUCuaGCUCGgCa-CGaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 41226 | 0.7 | 0.898758 |
Target: 5'- cGCGGUCGGAcGA-CGGGCCGccGCcGCc -3' miRNA: 3'- -CGUCAGCCU-CUaGCUCGGCa-CGaUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 27522 | 0.7 | 0.898129 |
Target: 5'- aGC-GUCGGAGGcggcucagaccaaUCGAGCCGggcGCUAa- -3' miRNA: 3'- -CGuCAGCCUCU-------------AGCUCGGCa--CGAUgc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 87825 | 0.7 | 0.892368 |
Target: 5'- gGCGGUCGGAGGggcCGAGgCGaaaUGCgccgagGCGa -3' miRNA: 3'- -CGUCAGCCUCUa--GCUCgGC---ACGa-----UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 168715 | 0.7 | 0.8712 |
Target: 5'- cGCcGUCGGGGAgcUCGugcccuccuugcaGGCCGUGCagGCGc -3' miRNA: 3'- -CGuCAGCCUCU--AGC-------------UCGGCACGa-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 26663 | 0.7 | 0.869766 |
Target: 5'- -aGGUCGGGGGcgggcUCGAagcggcagacguacGCCGUGCUgGCGg -3' miRNA: 3'- cgUCAGCCUCU-----AGCU--------------CGGCACGA-UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 71409 | 0.7 | 0.864683 |
Target: 5'- cGCccccgCGGAGAUCGuGCUGagGCUGCGc -3' miRNA: 3'- -CGuca--GCCUCUAGCuCGGCa-CGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 73907 | 0.71 | 0.84963 |
Target: 5'- uCAGcgCGGGGA-CGuacaGGCCGUGCUGCu -3' miRNA: 3'- cGUCa-GCCUCUaGC----UCGGCACGAUGc -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 223916 | 0.71 | 0.833829 |
Target: 5'- cGCGGgCGaGAGGUCGAGCCGg---ACGg -3' miRNA: 3'- -CGUCaGC-CUCUAGCUCGGCacgaUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 137777 | 0.72 | 0.791413 |
Target: 5'- cGCGGUCuGGAGGUCGgcgcucggcgGGCCGcGCguccgGCGg -3' miRNA: 3'- -CGUCAG-CCUCUAGC----------UCGGCaCGa----UGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 129515 | 0.72 | 0.791413 |
Target: 5'- -aAGUCGGgagccgcguacaGGA-CGAcGCCGUGCUGCGu -3' miRNA: 3'- cgUCAGCC------------UCUaGCU-CGGCACGAUGC- -5' |
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9258 | 3' | -54.7 | NC_002512.2 | + | 178430 | 0.72 | 0.773439 |
Target: 5'- uGCAGUUGGcGGAUCGGGUCG-GC-GCGu -3' miRNA: 3'- -CGUCAGCC-UCUAGCUCGGCaCGaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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