miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9258 5' -58 NC_002512.2 + 120089 0.66 0.913446
Target:  5'- aUCCUGuucGCCCucccccuGGcGCCCGUGcgCCu -3'
miRNA:   3'- aAGGACu--UGGG-------CCaCGGGCACaaGGc -5'
9258 5' -58 NC_002512.2 + 4411 0.66 0.907659
Target:  5'- cUCCUGGACCCguucaccGGaGCCCugaaaGUGUUCgGu -3'
miRNA:   3'- aAGGACUUGGG-------CCaCGGG-----CACAAGgC- -5'
9258 5' -58 NC_002512.2 + 91576 0.66 0.896065
Target:  5'- -gCCaGGGCUCGG-GCgCGUGUUUCGg -3'
miRNA:   3'- aaGGaCUUGGGCCaCGgGCACAAGGC- -5'
9258 5' -58 NC_002512.2 + 194884 0.66 0.896065
Target:  5'- -aCCUGGcCCUGGUGCCCuucuccUCCGc -3'
miRNA:   3'- aaGGACUuGGGCCACGGGcaca--AGGC- -5'
9258 5' -58 NC_002512.2 + 162063 0.66 0.896065
Target:  5'- aUCCUGAGCCUG----CCGUGUUUCGu -3'
miRNA:   3'- aAGGACUUGGGCcacgGGCACAAGGC- -5'
9258 5' -58 NC_002512.2 + 55330 0.66 0.895433
Target:  5'- gUCCaGAACCCGGUGgaacgcuCCUG-GUUCuCGa -3'
miRNA:   3'- aAGGaCUUGGGCCAC-------GGGCaCAAG-GC- -5'
9258 5' -58 NC_002512.2 + 86803 0.66 0.894799
Target:  5'- -gCCUGGAgCCGGUGUacggcugggcaaCGUG-UCCGg -3'
miRNA:   3'- aaGGACUUgGGCCACGg-----------GCACaAGGC- -5'
9258 5' -58 NC_002512.2 + 69128 0.66 0.883027
Target:  5'- cUCCgGGACCuCcGUGCCCG-GggCCGg -3'
miRNA:   3'- aAGGaCUUGG-GcCACGGGCaCaaGGC- -5'
9258 5' -58 NC_002512.2 + 123005 0.67 0.876197
Target:  5'- cUCCUGAggAUCCGGcUGCUCGUGcgCg- -3'
miRNA:   3'- aAGGACU--UGGGCC-ACGGGCACaaGgc -5'
9258 5' -58 NC_002512.2 + 146054 0.67 0.876197
Target:  5'- -gCCUGcgacGACCCGG-GCCCGgacgCCGc -3'
miRNA:   3'- aaGGAC----UUGGGCCaCGGGCacaaGGC- -5'
9258 5' -58 NC_002512.2 + 129986 0.67 0.869164
Target:  5'- -gCCggGAGCgCCGGcggcgccgcgUGCCCGUGU-CCGc -3'
miRNA:   3'- aaGGa-CUUG-GGCC----------ACGGGCACAaGGC- -5'
9258 5' -58 NC_002512.2 + 226300 0.67 0.861934
Target:  5'- gUCCccGAGaccCCCGGgGCCUGUGggCCGu -3'
miRNA:   3'- aAGGa-CUU---GGGCCaCGGGCACaaGGC- -5'
9258 5' -58 NC_002512.2 + 119433 0.67 0.839111
Target:  5'- -aCCgcggGGACCUGGUGCgCGUccUCCGc -3'
miRNA:   3'- aaGGa---CUUGGGCCACGgGCAcaAGGC- -5'
9258 5' -58 NC_002512.2 + 126960 0.68 0.814719
Target:  5'- -gCCUGuuacGACCUGGgGCCCGUGg-CCGu -3'
miRNA:   3'- aaGGAC----UUGGGCCaCGGGCACaaGGC- -5'
9258 5' -58 NC_002512.2 + 102246 0.69 0.752779
Target:  5'- gUCC--GACCCGG-GCCCGgg-UCCGg -3'
miRNA:   3'- aAGGacUUGGGCCaCGGGCacaAGGC- -5'
9258 5' -58 NC_002512.2 + 157322 0.69 0.752779
Target:  5'- -aCCUGAACCgCGuGaucgacgaGUCCGUGUUCCGc -3'
miRNA:   3'- aaGGACUUGG-GC-Ca-------CGGGCACAAGGC- -5'
9258 5' -58 NC_002512.2 + 124997 0.69 0.743471
Target:  5'- -cCCUGGACCCGGc-CCCGUcGcgCCGu -3'
miRNA:   3'- aaGGACUUGGGCCacGGGCA-CaaGGC- -5'
9258 5' -58 NC_002512.2 + 115764 0.69 0.743471
Target:  5'- cUCCUGGA-CCGGUGgCCGUG--CCGu -3'
miRNA:   3'- aAGGACUUgGGCCACgGGCACaaGGC- -5'
9258 5' -58 NC_002512.2 + 14927 0.7 0.724591
Target:  5'- -gUCUGGAUCCGGacCCCGUGcgUCCGc -3'
miRNA:   3'- aaGGACUUGGGCCacGGGCACa-AGGC- -5'
9258 5' -58 NC_002512.2 + 11212 0.71 0.636911
Target:  5'- aUCCggcGGGCCCGGUguGCCCGgGUaUCCGc -3'
miRNA:   3'- aAGGa--CUUGGGCCA--CGGGCaCA-AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.