Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9258 | 5' | -58 | NC_002512.2 | + | 120089 | 0.66 | 0.913446 |
Target: 5'- aUCCUGuucGCCCucccccuGGcGCCCGUGcgCCu -3' miRNA: 3'- aAGGACu--UGGG-------CCaCGGGCACaaGGc -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 4411 | 0.66 | 0.907659 |
Target: 5'- cUCCUGGACCCguucaccGGaGCCCugaaaGUGUUCgGu -3' miRNA: 3'- aAGGACUUGGG-------CCaCGGG-----CACAAGgC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 91576 | 0.66 | 0.896065 |
Target: 5'- -gCCaGGGCUCGG-GCgCGUGUUUCGg -3' miRNA: 3'- aaGGaCUUGGGCCaCGgGCACAAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 194884 | 0.66 | 0.896065 |
Target: 5'- -aCCUGGcCCUGGUGCCCuucuccUCCGc -3' miRNA: 3'- aaGGACUuGGGCCACGGGcaca--AGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 162063 | 0.66 | 0.896065 |
Target: 5'- aUCCUGAGCCUG----CCGUGUUUCGu -3' miRNA: 3'- aAGGACUUGGGCcacgGGCACAAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 55330 | 0.66 | 0.895433 |
Target: 5'- gUCCaGAACCCGGUGgaacgcuCCUG-GUUCuCGa -3' miRNA: 3'- aAGGaCUUGGGCCAC-------GGGCaCAAG-GC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 86803 | 0.66 | 0.894799 |
Target: 5'- -gCCUGGAgCCGGUGUacggcugggcaaCGUG-UCCGg -3' miRNA: 3'- aaGGACUUgGGCCACGg-----------GCACaAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 69128 | 0.66 | 0.883027 |
Target: 5'- cUCCgGGACCuCcGUGCCCG-GggCCGg -3' miRNA: 3'- aAGGaCUUGG-GcCACGGGCaCaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 146054 | 0.67 | 0.876197 |
Target: 5'- -gCCUGcgacGACCCGG-GCCCGgacgCCGc -3' miRNA: 3'- aaGGAC----UUGGGCCaCGGGCacaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 123005 | 0.67 | 0.876197 |
Target: 5'- cUCCUGAggAUCCGGcUGCUCGUGcgCg- -3' miRNA: 3'- aAGGACU--UGGGCC-ACGGGCACaaGgc -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 129986 | 0.67 | 0.869164 |
Target: 5'- -gCCggGAGCgCCGGcggcgccgcgUGCCCGUGU-CCGc -3' miRNA: 3'- aaGGa-CUUG-GGCC----------ACGGGCACAaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 226300 | 0.67 | 0.861934 |
Target: 5'- gUCCccGAGaccCCCGGgGCCUGUGggCCGu -3' miRNA: 3'- aAGGa-CUU---GGGCCaCGGGCACaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 119433 | 0.67 | 0.839111 |
Target: 5'- -aCCgcggGGACCUGGUGCgCGUccUCCGc -3' miRNA: 3'- aaGGa---CUUGGGCCACGgGCAcaAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 126960 | 0.68 | 0.814719 |
Target: 5'- -gCCUGuuacGACCUGGgGCCCGUGg-CCGu -3' miRNA: 3'- aaGGAC----UUGGGCCaCGGGCACaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 102246 | 0.69 | 0.752779 |
Target: 5'- gUCC--GACCCGG-GCCCGgg-UCCGg -3' miRNA: 3'- aAGGacUUGGGCCaCGGGCacaAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 157322 | 0.69 | 0.752779 |
Target: 5'- -aCCUGAACCgCGuGaucgacgaGUCCGUGUUCCGc -3' miRNA: 3'- aaGGACUUGG-GC-Ca-------CGGGCACAAGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 124997 | 0.69 | 0.743471 |
Target: 5'- -cCCUGGACCCGGc-CCCGUcGcgCCGu -3' miRNA: 3'- aaGGACUUGGGCCacGGGCA-CaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 115764 | 0.69 | 0.743471 |
Target: 5'- cUCCUGGA-CCGGUGgCCGUG--CCGu -3' miRNA: 3'- aAGGACUUgGGCCACgGGCACaaGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 14927 | 0.7 | 0.724591 |
Target: 5'- -gUCUGGAUCCGGacCCCGUGcgUCCGc -3' miRNA: 3'- aaGGACUUGGGCCacGGGCACa-AGGC- -5' |
|||||||
9258 | 5' | -58 | NC_002512.2 | + | 11212 | 0.71 | 0.636911 |
Target: 5'- aUCCggcGGGCCCGGUguGCCCGgGUaUCCGc -3' miRNA: 3'- aAGGa--CUUGGGCCA--CGGGCaCA-AGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home