miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9259 3' -56.3 NC_002512.2 + 221278 0.66 0.95518
Target:  5'- cGggGCGCgUggaggggggggaggcCGgGgucggCGGGGAGCGGGUa -3'
miRNA:   3'- -CuuCGCGaA---------------GCgCa----GCCUCUCGCUCA- -5'
9259 3' -56.3 NC_002512.2 + 82363 0.66 0.953653
Target:  5'- --cGCGCcUCGCGcCGGGaucGGCGGGa -3'
miRNA:   3'- cuuCGCGaAGCGCaGCCUc--UCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 65149 0.66 0.953653
Target:  5'- cGgcGCGCUaccgguccUCGaCGUCGGAGu-CGGGUa -3'
miRNA:   3'- -CuuCGCGA--------AGC-GCAGCCUCucGCUCA- -5'
9259 3' -56.3 NC_002512.2 + 94793 0.66 0.949685
Target:  5'- aGGGCGCgcaCGaCG-CGGAGAcGCGGGg -3'
miRNA:   3'- cUUCGCGaa-GC-GCaGCCUCU-CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 221847 0.66 0.949685
Target:  5'- gGggGCGCcUCGgGacCGGgaccucucGGAGCGGGUg -3'
miRNA:   3'- -CuuCGCGaAGCgCa-GCC--------UCUCGCUCA- -5'
9259 3' -56.3 NC_002512.2 + 216490 0.66 0.949685
Target:  5'- gGAGGCGCagCGCGUCaGGuAGCGGa- -3'
miRNA:   3'- -CUUCGCGaaGCGCAGcCUcUCGCUca -5'
9259 3' -56.3 NC_002512.2 + 9876 0.66 0.945498
Target:  5'- cGGAGCgGCcUCucgacccgccggGCGagGGGGAGCGAGg -3'
miRNA:   3'- -CUUCG-CGaAG------------CGCagCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 228415 0.66 0.941087
Target:  5'- cGggGCGCUggGgGgCGGGG-GCGGGa -3'
miRNA:   3'- -CuuCGCGAagCgCaGCCUCuCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 34934 0.66 0.936453
Target:  5'- -cGGCGgggUCGCGgcgaCGGGGAGCGGa- -3'
miRNA:   3'- cuUCGCga-AGCGCa---GCCUCUCGCUca -5'
9259 3' -56.3 NC_002512.2 + 229455 0.66 0.936453
Target:  5'- gGggGgGCUUUgcgGCGUCGGucgcGGGcGCGAGg -3'
miRNA:   3'- -CuuCgCGAAG---CGCAGCC----UCU-CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 51 0.66 0.936453
Target:  5'- gGggGgGCUUUgcgGCGUCGGucgcGGGcGCGAGg -3'
miRNA:   3'- -CuuCgCGAAG---CGCAGCC----UCU-CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 163395 0.66 0.936453
Target:  5'- cGGGCGaaaaCGUcaCGGAGAGCGAGg -3'
miRNA:   3'- cUUCGCgaa-GCGcaGCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 224167 0.66 0.931592
Target:  5'- cGggGCGggggCGCG-CGGAGAGagaGAGa -3'
miRNA:   3'- -CuuCGCgaa-GCGCaGCCUCUCg--CUCa -5'
9259 3' -56.3 NC_002512.2 + 164801 0.67 0.926504
Target:  5'- cAAGCGC-UCGCGacgggacUGGAGAGcCGAGc -3'
miRNA:   3'- cUUCGCGaAGCGCa------GCCUCUC-GCUCa -5'
9259 3' -56.3 NC_002512.2 + 131022 0.67 0.926504
Target:  5'- cGAcGCGCUcgaggGCGUCGGGGccGCGGGg -3'
miRNA:   3'- -CUuCGCGAag---CGCAGCCUCu-CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 228990 0.67 0.92119
Target:  5'- aGAGGCaGaagaaGCG-CGGAGAGCGGGa -3'
miRNA:   3'- -CUUCG-Cgaag-CGCaGCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 91694 0.67 0.915649
Target:  5'- cGAGGCGgaUCGUGgagcugaUGGAGAaGCGGGa -3'
miRNA:   3'- -CUUCGCgaAGCGCa------GCCUCU-CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 8051 0.67 0.909882
Target:  5'- cGAGGCGCccccgCGgGUCGGAcgccGAGaCGAGc -3'
miRNA:   3'- -CUUCGCGaa---GCgCAGCCU----CUC-GCUCa -5'
9259 3' -56.3 NC_002512.2 + 95004 0.67 0.903891
Target:  5'- uGAGGaCGCgUCGCGUCguccggggcaGGGGGGCGGu- -3'
miRNA:   3'- -CUUC-GCGaAGCGCAG----------CCUCUCGCUca -5'
9259 3' -56.3 NC_002512.2 + 5494 0.68 0.891246
Target:  5'- uGgcGCGCgucCGCGcCGGGGucGCGAGg -3'
miRNA:   3'- -CuuCGCGaa-GCGCaGCCUCu-CGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.