miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9259 3' -56.3 NC_002512.2 + 199819 0.68 0.891246
Target:  5'- gGggGCGgaUCGgGUggagGGGGGGCGGGa -3'
miRNA:   3'- -CuuCGCgaAGCgCAg---CCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 155038 0.68 0.870669
Target:  5'- cGGAGCGgaUCGCGaCGGGGAGgGu-- -3'
miRNA:   3'- -CUUCGCgaAGCGCaGCCUCUCgCuca -5'
9259 3' -56.3 NC_002512.2 + 132167 0.68 0.870669
Target:  5'- uGAGCGCg--GCGUCGu-GAGCGGGa -3'
miRNA:   3'- cUUCGCGaagCGCAGCcuCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 188897 0.68 0.863397
Target:  5'- aGAAGUGCUgaaggugcgcgCGCgGUCGGAGAgucccggugGCGGGg -3'
miRNA:   3'- -CUUCGCGAa----------GCG-CAGCCUCU---------CGCUCa -5'
9259 3' -56.3 NC_002512.2 + 108343 0.68 0.863397
Target:  5'- -cGGCGCggcaugCGCGgaCGGAcGGGCGGGUg -3'
miRNA:   3'- cuUCGCGaa----GCGCa-GCCU-CUCGCUCA- -5'
9259 3' -56.3 NC_002512.2 + 22205 0.69 0.855927
Target:  5'- cGGAGCGCUUCGgcCGgcgGGAGAGCccGGGa -3'
miRNA:   3'- -CUUCGCGAAGC--GCag-CCUCUCG--CUCa -5'
9259 3' -56.3 NC_002512.2 + 131218 0.69 0.855927
Target:  5'- cAGGCGCUcgacgUCGCgGUCGGAGGccGCG-GUg -3'
miRNA:   3'- cUUCGCGA-----AGCG-CAGCCUCU--CGCuCA- -5'
9259 3' -56.3 NC_002512.2 + 150288 0.69 0.855927
Target:  5'- -cGGCGCUgccgccCGCGaagaggCGGAgGAGCGAGa -3'
miRNA:   3'- cuUCGCGAa-----GCGCa-----GCCU-CUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 103672 0.69 0.855927
Target:  5'- cGAGCGCcUCGaCGUCGcaGAGGGCGGc- -3'
miRNA:   3'- cUUCGCGaAGC-GCAGC--CUCUCGCUca -5'
9259 3' -56.3 NC_002512.2 + 89443 0.69 0.848266
Target:  5'- -uGGCGCgagcUGUGUCGGAaGGCGAGc -3'
miRNA:   3'- cuUCGCGaa--GCGCAGCCUcUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 219702 0.69 0.848266
Target:  5'- aGGAGCGUcggCGC-UCGGGGcGCGAGa -3'
miRNA:   3'- -CUUCGCGaa-GCGcAGCCUCuCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 126228 0.69 0.815823
Target:  5'- cGAGGCGC-UCGUGgccgccgaGGAGGGcCGGGUg -3'
miRNA:   3'- -CUUCGCGaAGCGCag------CCUCUC-GCUCA- -5'
9259 3' -56.3 NC_002512.2 + 135569 0.7 0.780851
Target:  5'- cGAGCGUUUCGCGcCGGGGcGCaaccGGGUg -3'
miRNA:   3'- cUUCGCGAAGCGCaGCCUCuCG----CUCA- -5'
9259 3' -56.3 NC_002512.2 + 75746 0.7 0.780851
Target:  5'- gGAGGCGaccgagcgCGCGUCGGAGAccGCGGa- -3'
miRNA:   3'- -CUUCGCgaa-----GCGCAGCCUCU--CGCUca -5'
9259 3' -56.3 NC_002512.2 + 135209 0.71 0.753265
Target:  5'- aGGGCaGCUgCGCGcCGGAGAGCGuGc -3'
miRNA:   3'- cUUCG-CGAaGCGCaGCCUCUCGCuCa -5'
9259 3' -56.3 NC_002512.2 + 158833 0.71 0.753265
Target:  5'- gGAGGUGCUgaCGCG--GGGGAGCGGGg -3'
miRNA:   3'- -CUUCGCGAa-GCGCagCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 165712 0.71 0.753265
Target:  5'- ---cUGCUUCGuCGUCGGGGGGuCGGGg -3'
miRNA:   3'- cuucGCGAAGC-GCAGCCUCUC-GCUCa -5'
9259 3' -56.3 NC_002512.2 + 121892 0.71 0.724767
Target:  5'- gGggGaCGCUcggcgaCGCG-CGGGGAGCGAGc -3'
miRNA:   3'- -CuuC-GCGAa-----GCGCaGCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 100242 0.71 0.715105
Target:  5'- cGGGCgGCgacCGCGuccUCGGAGAGCGGGa -3'
miRNA:   3'- cUUCG-CGaa-GCGC---AGCCUCUCGCUCa -5'
9259 3' -56.3 NC_002512.2 + 11355 0.72 0.705376
Target:  5'- aGAGCGCaaacugUUCGCGUCGGAcGA-CGAGg -3'
miRNA:   3'- cUUCGCG------AAGCGCAGCCU-CUcGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.