miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9259 5' -56.2 NC_002512.2 + 161296 0.66 0.941945
Target:  5'- -cGCUGGCcuacgacgaGcACCUGUACGugGUCa- -3'
miRNA:   3'- uuUGACCG---------CcUGGACGUGCugCAGaa -5'
9259 5' -56.2 NC_002512.2 + 116888 0.66 0.941945
Target:  5'- cGGCUGGCGGcgggGCCgggGCgggcuccucggACGGCGUCc- -3'
miRNA:   3'- uUUGACCGCC----UGGa--CG-----------UGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 21497 0.66 0.941945
Target:  5'- -cGCaGGCGGGCCU-CGCaGCGUCg- -3'
miRNA:   3'- uuUGaCCGCCUGGAcGUGcUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 60701 0.66 0.937275
Target:  5'- -cGCUGGUGGACCcGCACuucACgGUCa- -3'
miRNA:   3'- uuUGACCGCCUGGaCGUGc--UG-CAGaa -5'
9259 5' -56.2 NC_002512.2 + 49173 0.66 0.937275
Target:  5'- -cGCUGaG-GGACCUGUGCGACGa--- -3'
miRNA:   3'- uuUGAC-CgCCUGGACGUGCUGCagaa -5'
9259 5' -56.2 NC_002512.2 + 170362 0.66 0.937275
Target:  5'- cAGCgUGGCcaGGGCCgUGCGCGGCGcCg- -3'
miRNA:   3'- uUUG-ACCG--CCUGG-ACGUGCUGCaGaa -5'
9259 5' -56.2 NC_002512.2 + 6351 0.66 0.937275
Target:  5'- gGGGCcGGCGGGCCgcggGCGCGugcCGUUc- -3'
miRNA:   3'- -UUUGaCCGCCUGGa---CGUGCu--GCAGaa -5'
9259 5' -56.2 NC_002512.2 + 165418 0.66 0.932372
Target:  5'- aGGGCcGGCGGGCCUaCGagauCGGCGUCg- -3'
miRNA:   3'- -UUUGaCCGCCUGGAcGU----GCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 59373 0.66 0.932372
Target:  5'- aGAACgUGGCGGAgaUGCGCGACa---- -3'
miRNA:   3'- -UUUG-ACCGCCUggACGUGCUGcagaa -5'
9259 5' -56.2 NC_002512.2 + 65467 0.66 0.927234
Target:  5'- ----cGGC-GACCUGCAUGGCGUg-- -3'
miRNA:   3'- uuugaCCGcCUGGACGUGCUGCAgaa -5'
9259 5' -56.2 NC_002512.2 + 119100 0.66 0.927234
Target:  5'- ----cGGCGGACCUGgugGGCGUCg- -3'
miRNA:   3'- uuugaCCGCCUGGACgugCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 96468 0.66 0.927234
Target:  5'- cAAAC-GcGCGGACC-GCGCGGcCGUCUc -3'
miRNA:   3'- -UUUGaC-CGCCUGGaCGUGCU-GCAGAa -5'
9259 5' -56.2 NC_002512.2 + 90913 0.66 0.926708
Target:  5'- cGGACUGGCGGccgcgaacgggGCCgGCGCGGCcgccgccGUCg- -3'
miRNA:   3'- -UUUGACCGCC-----------UGGaCGUGCUG-------CAGaa -5'
9259 5' -56.2 NC_002512.2 + 104872 0.66 0.921862
Target:  5'- cAGCgGGCGGcGCCgacgGCGCGACGg--- -3'
miRNA:   3'- uUUGaCCGCC-UGGa---CGUGCUGCagaa -5'
9259 5' -56.2 NC_002512.2 + 88726 0.66 0.916256
Target:  5'- aAGACgucGCGGAaggucguguagaUCUGCACGGCGUCc- -3'
miRNA:   3'- -UUUGac-CGCCU------------GGACGUGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 7317 0.66 0.916256
Target:  5'- cGAC-GGCGGGCCgcgGCGgGACgGUCg- -3'
miRNA:   3'- uUUGaCCGCCUGGa--CGUgCUG-CAGaa -5'
9259 5' -56.2 NC_002512.2 + 167434 0.67 0.910416
Target:  5'- ----cGGCGGcacGCCUGCGCGuuCGUCc- -3'
miRNA:   3'- uuugaCCGCC---UGGACGUGCu-GCAGaa -5'
9259 5' -56.2 NC_002512.2 + 112094 0.67 0.904344
Target:  5'- --cCUGGCGGACC--CACG-CGUCg- -3'
miRNA:   3'- uuuGACCGCCUGGacGUGCuGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 98013 0.67 0.904344
Target:  5'- -uGCUGGUGGccguCCUGauccgcCGCGGCGUCa- -3'
miRNA:   3'- uuUGACCGCCu---GGAC------GUGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 157098 0.67 0.904344
Target:  5'- ----cGGCGGGCCcGUcccgGCGACGUCc- -3'
miRNA:   3'- uuugaCCGCCUGGaCG----UGCUGCAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.