miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9259 5' -56.2 NC_002512.2 + 18385 0.67 0.898043
Target:  5'- cGAugUGGCGGcacaggagcuCCUGCugGACGa--- -3'
miRNA:   3'- -UUugACCGCCu---------GGACGugCUGCagaa -5'
9259 5' -56.2 NC_002512.2 + 26700 0.67 0.898043
Target:  5'- -uGCUGGCGGugACCUGgCugG-CGUCc- -3'
miRNA:   3'- uuUGACCGCC--UGGAC-GugCuGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 106013 0.67 0.891515
Target:  5'- cGAACgGGCGGcgccGCCggggGUGCGGCGUCc- -3'
miRNA:   3'- -UUUGaCCGCC----UGGa---CGUGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 220613 0.67 0.891515
Target:  5'- cGAGCUGGUgcugugccgGGA-CUGCgACGACGUCg- -3'
miRNA:   3'- -UUUGACCG---------CCUgGACG-UGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 47021 0.67 0.884764
Target:  5'- ----cGGCGGAgCUGCugGGCGagCUg -3'
miRNA:   3'- uuugaCCGCCUgGACGugCUGCa-GAa -5'
9259 5' -56.2 NC_002512.2 + 98351 0.67 0.877793
Target:  5'- cGAACUGGCcguuGGcguCCUuCACGGCGUCUc -3'
miRNA:   3'- -UUUGACCG----CCu--GGAcGUGCUGCAGAa -5'
9259 5' -56.2 NC_002512.2 + 222730 0.67 0.877793
Target:  5'- -uGCUGGaCGGcaacgGCCagcUGCugGACGUCUc -3'
miRNA:   3'- uuUGACC-GCC-----UGG---ACGugCUGCAGAa -5'
9259 5' -56.2 NC_002512.2 + 153380 0.68 0.870607
Target:  5'- cGGCUGGCGGuCCggaGCGACGUg-- -3'
miRNA:   3'- uUUGACCGCCuGGacgUGCUGCAgaa -5'
9259 5' -56.2 NC_002512.2 + 28757 0.68 0.870607
Target:  5'- cGGACUGGUGGACCUGgagcgccacCGCGACc---- -3'
miRNA:   3'- -UUUGACCGCCUGGAC---------GUGCUGcagaa -5'
9259 5' -56.2 NC_002512.2 + 140584 0.68 0.863211
Target:  5'- gAGACggagGGCGGACgCUGCGagGugGUCc- -3'
miRNA:   3'- -UUUGa---CCGCCUG-GACGUg-CugCAGaa -5'
9259 5' -56.2 NC_002512.2 + 120819 0.68 0.847813
Target:  5'- --cCUGGCgcgcggGGACCUGCugGGCGa--- -3'
miRNA:   3'- uuuGACCG------CCUGGACGugCUGCagaa -5'
9259 5' -56.2 NC_002512.2 + 132008 0.68 0.847813
Target:  5'- cGGGCgccgGGgGGACCUcgGCgGCGACGUCg- -3'
miRNA:   3'- -UUUGa---CCgCCUGGA--CG-UGCUGCAGaa -5'
9259 5' -56.2 NC_002512.2 + 4551 0.68 0.847813
Target:  5'- gAGGC-GGCGcGACCgacgGCuGCGGCGUCUg -3'
miRNA:   3'- -UUUGaCCGC-CUGGa---CG-UGCUGCAGAa -5'
9259 5' -56.2 NC_002512.2 + 156713 0.68 0.839822
Target:  5'- aAAACUGuGCGGACgaggUUGUACGugGCGUCUa -3'
miRNA:   3'- -UUUGAC-CGCCUG----GACGUGC--UGCAGAa -5'
9259 5' -56.2 NC_002512.2 + 89113 0.68 0.839822
Target:  5'- gGAGCgaguaGGCguagaGGGCCUGCucacACGGCGUCUUc -3'
miRNA:   3'- -UUUGa----CCG-----CCUGGACG----UGCUGCAGAA- -5'
9259 5' -56.2 NC_002512.2 + 13621 0.69 0.823292
Target:  5'- cGAGCUGGCGGugcgggcggcgcACCUGaugACGACcGUCUc -3'
miRNA:   3'- -UUUGACCGCC------------UGGACg--UGCUG-CAGAa -5'
9259 5' -56.2 NC_002512.2 + 98277 0.69 0.823292
Target:  5'- uGGCcgGGCGGGCCggGCGCuucucgcugaagGACGUCUUu -3'
miRNA:   3'- uUUGa-CCGCCUGGa-CGUG------------CUGCAGAA- -5'
9259 5' -56.2 NC_002512.2 + 147610 0.69 0.814768
Target:  5'- cGACgacGGCGGACCUGuCGCuGGCGUg-- -3'
miRNA:   3'- uUUGa--CCGCCUGGAC-GUG-CUGCAgaa -5'
9259 5' -56.2 NC_002512.2 + 134846 0.69 0.814768
Target:  5'- -cGCUGGUGcucCCcGCGCGACGUCUc -3'
miRNA:   3'- uuUGACCGCcu-GGaCGUGCUGCAGAa -5'
9259 5' -56.2 NC_002512.2 + 105100 0.69 0.806081
Target:  5'- cAGCUGGaccCGGACCcgggacUGCGCGGuCGUCUg -3'
miRNA:   3'- uUUGACC---GCCUGG------ACGUGCU-GCAGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.