miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9262 3' -55 NC_002512.2 + 220609 0.65 0.981139
Target:  5'- uGCGCGAGCUGgUGCug-UGCCgGGAc- -3'
miRNA:   3'- -CGCGCUCGGC-AUGuuuGUGGgCCUcu -5'
9262 3' -55 NC_002512.2 + 106515 0.65 0.981139
Target:  5'- cGCGCGGGuuG-ACGAucucGCGgcCCCGGAc- -3'
miRNA:   3'- -CGCGCUCggCaUGUU----UGU--GGGCCUcu -5'
9262 3' -55 NC_002512.2 + 226320 0.65 0.981139
Target:  5'- cUGUGGGCCGUggcucgggacgGCAGACggaucuucuACCCGGGc- -3'
miRNA:   3'- cGCGCUCGGCA-----------UGUUUG---------UGGGCCUcu -5'
9262 3' -55 NC_002512.2 + 89334 0.65 0.981139
Target:  5'- uCGgaGAGCuCGUGCAccucgGugGCCgCGGAGAu -3'
miRNA:   3'- cGCg-CUCG-GCAUGU-----UugUGG-GCCUCU- -5'
9262 3' -55 NC_002512.2 + 213001 0.65 0.981139
Target:  5'- cCGCG-GCCGU-CGG--GCCCGGGGc -3'
miRNA:   3'- cGCGCuCGGCAuGUUugUGGGCCUCu -5'
9262 3' -55 NC_002512.2 + 56334 0.65 0.981139
Target:  5'- aGCGCGAGUag-ACGGcACAgCCCGGgcAGAc -3'
miRNA:   3'- -CGCGCUCGgcaUGUU-UGU-GGGCC--UCU- -5'
9262 3' -55 NC_002512.2 + 38076 0.65 0.981139
Target:  5'- cGCGCGcGUCaGUGCccgguguCCCGGGGAa -3'
miRNA:   3'- -CGCGCuCGG-CAUGuuugu--GGGCCUCU- -5'
9262 3' -55 NC_002512.2 + 84154 0.65 0.981139
Target:  5'- aGCGCGuGGCCGcGCGGGagguCCCGGuccAGGu -3'
miRNA:   3'- -CGCGC-UCGGCaUGUUUgu--GGGCC---UCU- -5'
9262 3' -55 NC_002512.2 + 67756 0.65 0.981139
Target:  5'- uCGCGAGCCGggguCGucuccGGCGCCgGGGu- -3'
miRNA:   3'- cGCGCUCGGCau--GU-----UUGUGGgCCUcu -5'
9262 3' -55 NC_002512.2 + 11274 0.65 0.980935
Target:  5'- cGCGCguccuucGAGuCCGcggGCgAGAC-CCCGGGGAg -3'
miRNA:   3'- -CGCG-------CUC-GGCa--UG-UUUGuGGGCCUCU- -5'
9262 3' -55 NC_002512.2 + 45390 0.65 0.980935
Target:  5'- aCGCGGGCCGggacugucgcucgUGCGGGCGCUCGa--- -3'
miRNA:   3'- cGCGCUCGGC-------------AUGUUUGUGGGCcucu -5'
9262 3' -55 NC_002512.2 + 185315 0.65 0.980935
Target:  5'- gGCGCGAGgagcugcCCGUcuGCGucgcCGCCCGGGu- -3'
miRNA:   3'- -CGCGCUC-------GGCA--UGUuu--GUGGGCCUcu -5'
9262 3' -55 NC_002512.2 + 227792 0.65 0.98073
Target:  5'- cCGCG-GCCGUACcgcccgcuccCGCCCGGcguGGAc -3'
miRNA:   3'- cGCGCuCGGCAUGuuu-------GUGGGCC---UCU- -5'
9262 3' -55 NC_002512.2 + 110991 0.65 0.980524
Target:  5'- aGCGCGGGCCccguguucuucaccGUGu--ACACCCGGc-- -3'
miRNA:   3'- -CGCGCUCGG--------------CAUguuUGUGGGCCucu -5'
9262 3' -55 NC_002512.2 + 104154 0.66 0.97903
Target:  5'- aCGCGAcGCCGgACAGGaaggcgcgcgucUACCUGGAGc -3'
miRNA:   3'- cGCGCU-CGGCaUGUUU------------GUGGGCCUCu -5'
9262 3' -55 NC_002512.2 + 95755 0.66 0.97903
Target:  5'- aCGCGcGCCGcgACGGcCGCCUGGAcGGg -3'
miRNA:   3'- cGCGCuCGGCa-UGUUuGUGGGCCU-CU- -5'
9262 3' -55 NC_002512.2 + 200286 0.66 0.97903
Target:  5'- aCGaCGAGCCGU-CGGACuggggcucguccGCCCucGGGGAg -3'
miRNA:   3'- cGC-GCUCGGCAuGUUUG------------UGGG--CCUCU- -5'
9262 3' -55 NC_002512.2 + 158769 0.66 0.97903
Target:  5'- uGCGCGAGaaGauccugGCGcugGugGCCCGGGGc -3'
miRNA:   3'- -CGCGCUCggCa-----UGU---UugUGGGCCUCu -5'
9262 3' -55 NC_002512.2 + 225725 0.66 0.97903
Target:  5'- cCGCGAGCCGcgGCGAcucgcuCAgUCGGGGc -3'
miRNA:   3'- cGCGCUCGGCa-UGUUu-----GUgGGCCUCu -5'
9262 3' -55 NC_002512.2 + 226994 0.66 0.97903
Target:  5'- gGCcauCGAGUCGgACGAGgACaCCGGGGAc -3'
miRNA:   3'- -CGc--GCUCGGCaUGUUUgUG-GGCCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.