miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9262 5' -57.4 NC_002512.2 + 141493 0.66 0.948026
Target:  5'- aCGUGUCCcgGUUCUcggacuaCGUGGaGGGCaagacCGCg -3'
miRNA:   3'- -GCACAGG--CAAGAaa-----GCGCC-CCCG-----GCG- -5'
9262 5' -57.4 NC_002512.2 + 70873 0.66 0.948026
Target:  5'- uCG-GUCCGccCgg-CGCGgacgccGGGGCCGCc -3'
miRNA:   3'- -GCaCAGGCaaGaaaGCGC------CCCCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 96269 0.66 0.948026
Target:  5'- aGUGgaucaCCGgcagg-CGgGGGGGCUGCc -3'
miRNA:   3'- gCACa----GGCaagaaaGCgCCCCCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 147461 0.66 0.948026
Target:  5'- --cGUCUGUcgcugcuggUCUUcgCGCGGGcGCUGCg -3'
miRNA:   3'- gcaCAGGCA---------AGAAa-GCGCCCcCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 7266 0.66 0.943852
Target:  5'- --cGUCCGUcgggaUCgggCGCgaggccccGGGGGCCGg -3'
miRNA:   3'- gcaCAGGCA-----AGaaaGCG--------CCCCCGGCg -5'
9262 5' -57.4 NC_002512.2 + 118055 0.66 0.939465
Target:  5'- cCGUGcCCGggCUcgacucCGCggaGGGGGCgGCu -3'
miRNA:   3'- -GCACaGGCaaGAaa----GCG---CCCCCGgCG- -5'
9262 5' -57.4 NC_002512.2 + 82702 0.66 0.939465
Target:  5'- --cGUCCGUg----CGCGGcgcGGGcCCGCg -3'
miRNA:   3'- gcaCAGGCAagaaaGCGCC---CCC-GGCG- -5'
9262 5' -57.4 NC_002512.2 + 96464 0.66 0.934864
Target:  5'- cCGcGUCCGggUUUUucgucCGCGGGGcGCCa- -3'
miRNA:   3'- -GCaCAGGCaaGAAA-----GCGCCCC-CGGcg -5'
9262 5' -57.4 NC_002512.2 + 153619 0.66 0.934864
Target:  5'- --cGUCCGUcgugacuaaUCcUUCggcggacgggaGCGGGGGCaCGCu -3'
miRNA:   3'- gcaCAGGCA---------AGaAAG-----------CGCCCCCG-GCG- -5'
9262 5' -57.4 NC_002512.2 + 109160 0.66 0.934864
Target:  5'- ---cUCaCGUUC--UCGCGcGGGGCCGg -3'
miRNA:   3'- gcacAG-GCAAGaaAGCGC-CCCCGGCg -5'
9262 5' -57.4 NC_002512.2 + 45782 0.66 0.934864
Target:  5'- cCGUGggCGaaCUgcaccCGcCGGGGGCCGUg -3'
miRNA:   3'- -GCACagGCaaGAaa---GC-GCCCCCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 120767 0.66 0.934864
Target:  5'- aCGUG-CUGgacUCggcggccgUCgGCGGGGGCgGCg -3'
miRNA:   3'- -GCACaGGCa--AGaa------AG-CGCCCCCGgCG- -5'
9262 5' -57.4 NC_002512.2 + 14773 0.66 0.925014
Target:  5'- cCGg--CCGUUCUg--GCGGucGGCCGCg -3'
miRNA:   3'- -GCacaGGCAAGAaagCGCCc-CCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 167258 0.66 0.925014
Target:  5'- uCGUGUCU-UUCcgUUCGUGGGGagagaCCGCc -3'
miRNA:   3'- -GCACAGGcAAGa-AAGCGCCCCc----GGCG- -5'
9262 5' -57.4 NC_002512.2 + 100046 0.66 0.925014
Target:  5'- --cG-CCGggcgCUgagaCGCGGGGGCgGCg -3'
miRNA:   3'- gcaCaGGCaa--GAaa--GCGCCCCCGgCG- -5'
9262 5' -57.4 NC_002512.2 + 91879 0.67 0.914298
Target:  5'- --cGUCCGg-----CGCGGGcGGCgGCg -3'
miRNA:   3'- gcaCAGGCaagaaaGCGCCC-CCGgCG- -5'
9262 5' -57.4 NC_002512.2 + 89015 0.67 0.908618
Target:  5'- aGUG-CgGUUCUucgaacUUCGCGcaGGCCGCg -3'
miRNA:   3'- gCACaGgCAAGA------AAGCGCccCCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 156832 0.67 0.902724
Target:  5'- -cUGUgCGaggcc-UGCGGGGGCCGCu -3'
miRNA:   3'- gcACAgGCaagaaaGCGCCCCCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 104263 0.67 0.896619
Target:  5'- uCGUGUguggucgccgCCGgcgUCUUUCucgcguccggcgGCGGGaGGCUGCc -3'
miRNA:   3'- -GCACA----------GGCa--AGAAAG------------CGCCC-CCGGCG- -5'
9262 5' -57.4 NC_002512.2 + 208670 0.67 0.896619
Target:  5'- ----cCCGggCggcgUCcCGGGGGCCGCu -3'
miRNA:   3'- gcacaGGCaaGaa--AGcGCCCCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.