miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 5' -63.6 NC_002512.2 + 186735 0.66 0.739365
Target:  5'- cGGCCaacgUCGCGGGcacCACGCCcGGCauguucccgCGGg -3'
miRNA:   3'- -CCGG----AGCGCCCc--GUGCGG-CUGga-------GCC- -5'
9265 5' -63.6 NC_002512.2 + 112742 0.66 0.739365
Target:  5'- cGGCa-CGCGGaaGGCGgagaGCCGGCCguccCGGa -3'
miRNA:   3'- -CCGgaGCGCC--CCGUg---CGGCUGGa---GCC- -5'
9265 5' -63.6 NC_002512.2 + 194623 0.66 0.739365
Target:  5'- cGGCCgucgcCGCGGGGgACcugcCCGuCCUCu- -3'
miRNA:   3'- -CCGGa----GCGCCCCgUGc---GGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 212478 0.66 0.739365
Target:  5'- cGCCUCGaGGacUACGacgacuCCGACCUCGGg -3'
miRNA:   3'- cCGGAGCgCCccGUGC------GGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 8056 0.66 0.739365
Target:  5'- cGCCccCGCGGGucGgACGCCGAgacgagcuCCUCGa -3'
miRNA:   3'- cCGGa-GCGCCC--CgUGCGGCU--------GGAGCc -5'
9265 5' -63.6 NC_002512.2 + 44461 0.66 0.739365
Target:  5'- cGGCCUCGaagaccuccaGGGCGCcCCGggGCCgggCGGa -3'
miRNA:   3'- -CCGGAGCgc--------CCCGUGcGGC--UGGa--GCC- -5'
9265 5' -63.6 NC_002512.2 + 182426 0.66 0.739365
Target:  5'- cGCCUUGCGGa--AC-UCGGCCUCGGc -3'
miRNA:   3'- cCGGAGCGCCccgUGcGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 2808 0.66 0.737589
Target:  5'- cGGCCggcgggacccggCGCGGGcGCGgGCCcgGACgaCGGc -3'
miRNA:   3'- -CCGGa-----------GCGCCC-CGUgCGG--CUGgaGCC- -5'
9265 5' -63.6 NC_002512.2 + 146103 0.66 0.730457
Target:  5'- cGGuCCUCgGCGGcGGCggcgGCGCCGuCUUCu- -3'
miRNA:   3'- -CC-GGAG-CGCC-CCG----UGCGGCuGGAGcc -5'
9265 5' -63.6 NC_002512.2 + 121376 0.66 0.730457
Target:  5'- cGGCCg-GUcGGGCGCcgggcCCGGCCUCGc -3'
miRNA:   3'- -CCGGagCGcCCCGUGc----GGCUGGAGCc -5'
9265 5' -63.6 NC_002512.2 + 96480 0.66 0.730457
Target:  5'- cGUC-CGCGGGGCgccaugGCGUCGcCCaCGGg -3'
miRNA:   3'- cCGGaGCGCCCCG------UGCGGCuGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 18910 0.66 0.730457
Target:  5'- cGGCCacgcaggCGCGacacaGGGCccggacgaccuCGuuGGCCUCGGg -3'
miRNA:   3'- -CCGGa------GCGC-----CCCGu----------GCggCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 209024 0.66 0.730457
Target:  5'- cGCCaugaGCGGGGCG-GCCGcguCC-CGGa -3'
miRNA:   3'- cCGGag--CGCCCCGUgCGGCu--GGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 186403 0.66 0.730457
Target:  5'- aGCUcCGCGuccucGGCuuccACGCCGugCUCGGc -3'
miRNA:   3'- cCGGaGCGCc----CCG----UGCGGCugGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 3506 0.66 0.730457
Target:  5'- uGCgUCGCaGGcccaCGCGCCGACCUuCGa -3'
miRNA:   3'- cCGgAGCGcCCc---GUGCGGCUGGA-GCc -5'
9265 5' -63.6 NC_002512.2 + 204724 0.66 0.730457
Target:  5'- gGGCCcgggGCGGGGgGC-CgGACC-CGGg -3'
miRNA:   3'- -CCGGag--CGCCCCgUGcGgCUGGaGCC- -5'
9265 5' -63.6 NC_002512.2 + 87483 0.66 0.730457
Target:  5'- cGCUguUCGUGGcGGC--GCUGAUCUCGGu -3'
miRNA:   3'- cCGG--AGCGCC-CCGugCGGCUGGAGCC- -5'
9265 5' -63.6 NC_002512.2 + 141310 0.66 0.730457
Target:  5'- -cCUUCGUGGGG-AUGCUGACCUaCGu -3'
miRNA:   3'- ccGGAGCGCCCCgUGCGGCUGGA-GCc -5'
9265 5' -63.6 NC_002512.2 + 44341 0.66 0.730457
Target:  5'- cGGCCacgcCGCGGGGCcgguAgGCCacccCCUCGa -3'
miRNA:   3'- -CCGGa---GCGCCCCG----UgCGGcu--GGAGCc -5'
9265 5' -63.6 NC_002512.2 + 46394 0.66 0.730457
Target:  5'- -cCCUCGCGGccguaggcGGCcCGCagcaCGGCCUUGGu -3'
miRNA:   3'- ccGGAGCGCC--------CCGuGCG----GCUGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.