miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9266 3' -59.2 NC_002512.2 + 121182 0.66 0.873171
Target:  5'- cUGGUcgcuCCCGUuC-CGGGCGCUGGC-Cg -3'
miRNA:   3'- -ACCAu---GGGCGuGaGCCCGCGGUUGuG- -5'
9266 3' -59.2 NC_002512.2 + 117706 0.66 0.873171
Target:  5'- gUGGccaUGCuCCGCGCgugCGGGCuCgAGCGCc -3'
miRNA:   3'- -ACC---AUG-GGCGUGa--GCCCGcGgUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 50035 0.66 0.873171
Target:  5'- cGGUggGCgCGCACacgCGGGgGCUggUGCu -3'
miRNA:   3'- aCCA--UGgGCGUGa--GCCCgCGGuuGUG- -5'
9266 3' -59.2 NC_002512.2 + 96472 0.66 0.873171
Target:  5'- gGGUuuuucgUCCGCG---GGGCGCCAugGCg -3'
miRNA:   3'- aCCAu-----GGGCGUgagCCCGCGGUugUG- -5'
9266 3' -59.2 NC_002512.2 + 98200 0.66 0.873171
Target:  5'- --cUACCUGCGCUcCGGGCucaccGCCcuCGCg -3'
miRNA:   3'- accAUGGGCGUGA-GCCCG-----CGGuuGUG- -5'
9266 3' -59.2 NC_002512.2 + 2104 0.66 0.873171
Target:  5'- cGGUACggCCGCgGCUCGGuCGCgGGCGu -3'
miRNA:   3'- aCCAUG--GGCG-UGAGCCcGCGgUUGUg -5'
9266 3' -59.2 NC_002512.2 + 29156 0.66 0.872473
Target:  5'- cGGUacgACCCGUucggaccGC-CGGGCGgcagcCCGACGCc -3'
miRNA:   3'- aCCA---UGGGCG-------UGaGCCCGC-----GGUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 12790 0.66 0.872473
Target:  5'- cGGcgccCCCGCugccccugcggauGCUCGGGCGgcugaacaucaCCGACAUg -3'
miRNA:   3'- aCCau--GGGCG-------------UGAGCCCGC-----------GGUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 99731 0.66 0.866098
Target:  5'- cGGgccgGCCCGcCGC-CGGGCcccgcgGCCGcgACACc -3'
miRNA:   3'- aCCa---UGGGC-GUGaGCCCG------CGGU--UGUG- -5'
9266 3' -59.2 NC_002512.2 + 192615 0.66 0.866098
Target:  5'- cGGaACCCuGUGCgUUGGGCGCuCGAUAUc -3'
miRNA:   3'- aCCaUGGG-CGUG-AGCCCGCG-GUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 108991 0.66 0.866098
Target:  5'- cGuGUACCUGC--UCGucGGCGCCGGCGg -3'
miRNA:   3'- aC-CAUGGGCGugAGC--CCGCGGUUGUg -5'
9266 3' -59.2 NC_002512.2 + 18717 0.66 0.866098
Target:  5'- aGGgcgGCgaCGCGCUCGGGCagcacGCCcuggauGACGCc -3'
miRNA:   3'- aCCa--UGg-GCGUGAGCCCG-----CGG------UUGUG- -5'
9266 3' -59.2 NC_002512.2 + 227822 0.66 0.866098
Target:  5'- gUGG-ACuCCGCGCUCccgcuGGCGCC-GCAg -3'
miRNA:   3'- -ACCaUG-GGCGUGAGc----CCGCGGuUGUg -5'
9266 3' -59.2 NC_002512.2 + 155164 0.66 0.866098
Target:  5'- cGGU-CUCGCucGCUCGcGGCGUCGugAg -3'
miRNA:   3'- aCCAuGGGCG--UGAGC-CCGCGGUugUg -5'
9266 3' -59.2 NC_002512.2 + 92731 0.66 0.86538
Target:  5'- cGGggggCGCGCUCGguccgauGGCGCCGACGa -3'
miRNA:   3'- aCCauggGCGUGAGC-------CCGCGGUUGUg -5'
9266 3' -59.2 NC_002512.2 + 224419 0.66 0.861761
Target:  5'- aGGUcCCCGaguucugcccccuucCGCUCuacGCGCCGACGCg -3'
miRNA:   3'- aCCAuGGGC---------------GUGAGcc-CGCGGUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 70515 0.66 0.861761
Target:  5'- cGGgACCCGCGaaUGGGacgccccgaccccgaCGCCGAUACa -3'
miRNA:   3'- aCCaUGGGCGUgaGCCC---------------GCGGUUGUG- -5'
9266 3' -59.2 NC_002512.2 + 211331 0.66 0.858831
Target:  5'- cGGU--CCGgGCcCGGGCGCUggggGACGCg -3'
miRNA:   3'- aCCAugGGCgUGaGCCCGCGG----UUGUG- -5'
9266 3' -59.2 NC_002512.2 + 227876 0.66 0.858831
Target:  5'- cUGGUGCCgGCucagGCgacgCGGGCGaguCCGAgGCc -3'
miRNA:   3'- -ACCAUGGgCG----UGa---GCCCGC---GGUUgUG- -5'
9266 3' -59.2 NC_002512.2 + 169043 0.66 0.858831
Target:  5'- cGGcGCCgGCAucucCUCGGGCGCgaGGgGCu -3'
miRNA:   3'- aCCaUGGgCGU----GAGCCCGCGg-UUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.