miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9266 5' -57 NC_002512.2 + 184199 0.66 0.950119
Target:  5'- ---gGGCCuGACuc-CCCGGAcCGCGGGu -3'
miRNA:   3'- acuaUCGG-CUGcaaGGGCCU-GCGCCU- -5'
9266 5' -57 NC_002512.2 + 78661 0.66 0.950119
Target:  5'- cGGUcgAGCCGGCG--CCgGGGCuCGGAg -3'
miRNA:   3'- aCUA--UCGGCUGCaaGGgCCUGcGCCU- -5'
9266 5' -57 NC_002512.2 + 80835 0.66 0.950119
Target:  5'- gGAggGGCCccguaGGCGagCCUcgGGACGCGGGg -3'
miRNA:   3'- aCUa-UCGG-----CUGCaaGGG--CCUGCGCCU- -5'
9266 5' -57 NC_002512.2 + 102061 0.66 0.950119
Target:  5'- ----cGCCGACGaccUCCCGGAgcCGGGa -3'
miRNA:   3'- acuauCGGCUGCa--AGGGCCUgcGCCU- -5'
9266 5' -57 NC_002512.2 + 2321 0.66 0.950119
Target:  5'- ----cGCCGGCGguccggaggCCuCGGuCGCGGAc -3'
miRNA:   3'- acuauCGGCUGCaa-------GG-GCCuGCGCCU- -5'
9266 5' -57 NC_002512.2 + 108240 0.66 0.950119
Target:  5'- aGGgacGCCG-CGagaUCCaGGACGCGGAg -3'
miRNA:   3'- aCUau-CGGCuGCa--AGGgCCUGCGCCU- -5'
9266 5' -57 NC_002512.2 + 153401 0.66 0.950119
Target:  5'- gUGG-AGCgCGGCGgcggUCgaGGugGCGGAa -3'
miRNA:   3'- -ACUaUCG-GCUGCa---AGggCCugCGCCU- -5'
9266 5' -57 NC_002512.2 + 219596 0.66 0.950119
Target:  5'- cUGGUGGCCGACucgcugCCCGGcuuCuCGGGc -3'
miRNA:   3'- -ACUAUCGGCUGcaa---GGGCCu--GcGCCU- -5'
9266 5' -57 NC_002512.2 + 128216 0.66 0.950119
Target:  5'- ----cGCCGACGUagaucggCCCGGcgucCGCGGc -3'
miRNA:   3'- acuauCGGCUGCAa------GGGCCu---GCGCCu -5'
9266 5' -57 NC_002512.2 + 139802 0.66 0.947691
Target:  5'- ---aGGCCGGCGggggCCUcggucggguguccaaGGACGUGGGc -3'
miRNA:   3'- acuaUCGGCUGCaa--GGG---------------CCUGCGCCU- -5'
9266 5' -57 NC_002512.2 + 147016 0.66 0.946029
Target:  5'- aGGUGGCgggaGACGgucaacgucUUCCUGGaccugcGCGCGGAc -3'
miRNA:   3'- aCUAUCGg---CUGC---------AAGGGCC------UGCGCCU- -5'
9266 5' -57 NC_002512.2 + 201935 0.66 0.946029
Target:  5'- ----cGgCGACGggCCCGGguACGUGGGa -3'
miRNA:   3'- acuauCgGCUGCaaGGGCC--UGCGCCU- -5'
9266 5' -57 NC_002512.2 + 110543 0.66 0.946029
Target:  5'- -cGUGaCCGGCGUUUCCGcccccGCGCGGGa -3'
miRNA:   3'- acUAUcGGCUGCAAGGGCc----UGCGCCU- -5'
9266 5' -57 NC_002512.2 + 87113 0.66 0.946029
Target:  5'- aGGUGGCgGAacaUCUCGGAgGCGGc -3'
miRNA:   3'- aCUAUCGgCUgcaAGGGCCUgCGCCu -5'
9266 5' -57 NC_002512.2 + 202203 0.66 0.941725
Target:  5'- gGAUcGCCGACGgaCCCgcgGGAUaCGGGg -3'
miRNA:   3'- aCUAuCGGCUGCaaGGG---CCUGcGCCU- -5'
9266 5' -57 NC_002512.2 + 170612 0.66 0.941725
Target:  5'- ---gAGCaCGACGUca-CGGACGUGGGc -3'
miRNA:   3'- acuaUCG-GCUGCAaggGCCUGCGCCU- -5'
9266 5' -57 NC_002512.2 + 123127 0.66 0.941725
Target:  5'- ----cGUCGGCGgccgUCCCGGGgGaCGGGg -3'
miRNA:   3'- acuauCGGCUGCa---AGGGCCUgC-GCCU- -5'
9266 5' -57 NC_002512.2 + 112049 0.66 0.941725
Target:  5'- aGAUGGCCucCGUgUCCaGGACGuCGGu -3'
miRNA:   3'- aCUAUCGGcuGCA-AGGgCCUGC-GCCu -5'
9266 5' -57 NC_002512.2 + 27973 0.66 0.941725
Target:  5'- cGAUgggcGGCCgGGCGagaUUCCGG-CGCGGGg -3'
miRNA:   3'- aCUA----UCGG-CUGCa--AGGGCCuGCGCCU- -5'
9266 5' -57 NC_002512.2 + 8724 0.66 0.939039
Target:  5'- cGGUcGGCCGcGCGcgCCCgcccgucgacgacggGGACGCGGu -3'
miRNA:   3'- aCUA-UCGGC-UGCaaGGG---------------CCUGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.