miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9268 3' -55.5 NC_002512.2 + 157046 0.66 0.973774
Target:  5'- gCGAggacccCGGcAAGGCGGGCGucccGGGGUCc -3'
miRNA:   3'- -GCUa-----GUC-UUUCGCCCGCuc--CCCUAGc -5'
9268 3' -55.5 NC_002512.2 + 103683 0.66 0.973774
Target:  5'- aCGucgCAGAGGGCGgcggacgcGGCGGGaGGGggCGc -3'
miRNA:   3'- -GCua-GUCUUUCGC--------CCGCUC-CCCuaGC- -5'
9268 3' -55.5 NC_002512.2 + 155884 0.66 0.973774
Target:  5'- -cGUCcccGAcGGCGGGCGcGGGGA-CGa -3'
miRNA:   3'- gcUAGu--CUuUCGCCCGCuCCCCUaGC- -5'
9268 3' -55.5 NC_002512.2 + 109015 0.66 0.973516
Target:  5'- gGAccUCGaGGGGCGGGCGgggacgaggaccgGGGGGGcUCGg -3'
miRNA:   3'- gCU--AGUcUUUCGCCCGC-------------UCCCCU-AGC- -5'
9268 3' -55.5 NC_002512.2 + 212395 0.66 0.972994
Target:  5'- aGAUCgAGGAGGCGGcCGAcgaggacgacgggcGGGaGGUCGa -3'
miRNA:   3'- gCUAG-UCUUUCGCCcGCU--------------CCC-CUAGC- -5'
9268 3' -55.5 NC_002512.2 + 160892 0.66 0.972196
Target:  5'- gGGuUCGGGAAGCgGGGCGGccGGGGcaagggacgcggacaGUCGc -3'
miRNA:   3'- gCU-AGUCUUUCG-CCCGCU--CCCC---------------UAGC- -5'
9268 3' -55.5 NC_002512.2 + 204957 0.66 0.972196
Target:  5'- uCGGUCGcugcgggccgagcccGAcgccGCGGGCGAcGGGGAcCGg -3'
miRNA:   3'- -GCUAGU---------------CUuu--CGCCCGCU-CCCCUaGC- -5'
9268 3' -55.5 NC_002512.2 + 14030 0.66 0.972196
Target:  5'- gGAUCAGAAcagguucccgaaggcGGCGGcGCguuccggccggGAGGGGAg-- -3'
miRNA:   3'- gCUAGUCUU---------------UCGCC-CG-----------CUCCCCUagc -5'
9268 3' -55.5 NC_002512.2 + 113268 0.66 0.971107
Target:  5'- gCGuUCAcGAAGGgGGGCcacaGGcGGGGGUCGu -3'
miRNA:   3'- -GCuAGU-CUUUCgCCCG----CU-CCCCUAGC- -5'
9268 3' -55.5 NC_002512.2 + 14166 0.66 0.971107
Target:  5'- aGGUCucGAcguGCGGGCaGAGcGGGAUgCGg -3'
miRNA:   3'- gCUAGu-CUuu-CGCCCG-CUC-CCCUA-GC- -5'
9268 3' -55.5 NC_002512.2 + 101521 0.66 0.971107
Target:  5'- gCGA-CGGGGA--GGGCGAGGGGGa-- -3'
miRNA:   3'- -GCUaGUCUUUcgCCCGCUCCCCUagc -5'
9268 3' -55.5 NC_002512.2 + 92015 0.66 0.971107
Target:  5'- gCGG-CGGAcucGCGGGCGucGGGGGAg-- -3'
miRNA:   3'- -GCUaGUCUuu-CGCCCGC--UCCCCUagc -5'
9268 3' -55.5 NC_002512.2 + 219837 0.66 0.971107
Target:  5'- nGGUCGGggGGUccGGCccgGGGGcGGAUCGc -3'
miRNA:   3'- gCUAGUCuuUCGc-CCG---CUCC-CCUAGC- -5'
9268 3' -55.5 NC_002512.2 + 223903 0.66 0.966445
Target:  5'- gGAgCGGGAGcggcGCGGGCGAgaggucgagccggacGGGGAggUCGa -3'
miRNA:   3'- gCUaGUCUUU----CGCCCGCU---------------CCCCU--AGC- -5'
9268 3' -55.5 NC_002512.2 + 121907 0.66 0.965201
Target:  5'- aCGcgCGGGgagcGAGCGGGaCGAGGcGGcggCGg -3'
miRNA:   3'- -GCuaGUCU----UUCGCCC-GCUCC-CCua-GC- -5'
9268 3' -55.5 NC_002512.2 + 96535 0.66 0.965201
Target:  5'- cCGAguUCAGGAAGCggaucGGGCGGcGGGAg-- -3'
miRNA:   3'- -GCU--AGUCUUUCG-----CCCGCUcCCCUagc -5'
9268 3' -55.5 NC_002512.2 + 96272 0.66 0.965201
Target:  5'- gGAUCAcc-GGCaGGCGGGGGGGc-- -3'
miRNA:   3'- gCUAGUcuuUCGcCCGCUCCCCUagc -5'
9268 3' -55.5 NC_002512.2 + 115269 0.66 0.965201
Target:  5'- gCGG-CGGGGAGCGccuGGCcGGGGuGAUCGu -3'
miRNA:   3'- -GCUaGUCUUUCGC---CCGcUCCC-CUAGC- -5'
9268 3' -55.5 NC_002512.2 + 191290 0.66 0.965201
Target:  5'- aGggCGGcGGGGCGGGgGAcGGGGGcCGg -3'
miRNA:   3'- gCuaGUC-UUUCGCCCgCU-CCCCUaGC- -5'
9268 3' -55.5 NC_002512.2 + 226496 0.66 0.963275
Target:  5'- uGGUCcucuggGGAccugugggccccgcgGAGCGGGCGGacggucugagcGGGGGUCa -3'
miRNA:   3'- gCUAG------UCU---------------UUCGCCCGCU-----------CCCCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.