miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9268 5' -64 NC_002512.2 + 103545 0.66 0.688974
Target:  5'- gUCGUGcGcGCCCGUcccggacgcggCGGCCUcgucguccaggagcaUCCUGGAg -3'
miRNA:   3'- gAGCAU-C-CGGGCG-----------GCCGGG---------------AGGACCU- -5'
9268 5' -64 NC_002512.2 + 112896 0.66 0.685241
Target:  5'- -gCGUGcGG-CCGUCGGCCCgCCcGGAc -3'
miRNA:   3'- gaGCAU-CCgGGCGGCCGGGaGGaCCU- -5'
9268 5' -64 NC_002512.2 + 158546 0.66 0.685241
Target:  5'- gCUgGUGGaCCUGCUggugGGCCgCUCCUGGc -3'
miRNA:   3'- -GAgCAUCcGGGCGG----CCGG-GAGGACCu -5'
9268 5' -64 NC_002512.2 + 125179 0.66 0.685241
Target:  5'- uUCGU-GGCCgGCCccuuccagguGGCCgUCCaGGAc -3'
miRNA:   3'- gAGCAuCCGGgCGG----------CCGGgAGGaCCU- -5'
9268 5' -64 NC_002512.2 + 199271 0.66 0.675884
Target:  5'- gUCGggcGGCCCGaacauCCGcGCCCUCCgguUGGu -3'
miRNA:   3'- gAGCau-CCGGGC-----GGC-CGGGAGG---ACCu -5'
9268 5' -64 NC_002512.2 + 184553 0.66 0.675884
Target:  5'- -gCGcGGGCCgGCggaCGGCCCUCCgacccgcGGGc -3'
miRNA:   3'- gaGCaUCCGGgCG---GCCGGGAGGa------CCU- -5'
9268 5' -64 NC_002512.2 + 110842 0.66 0.675884
Target:  5'- -aCGUgcgcggcgaacAGGCCCacgacgGCCGGCCCgUCCaccaGGAg -3'
miRNA:   3'- gaGCA-----------UCCGGG------CGGCCGGG-AGGa---CCU- -5'
9268 5' -64 NC_002512.2 + 103284 0.66 0.675884
Target:  5'- -aCGUAGGaCCCgcugaggaGCCGGCCgUCgUaGGAc -3'
miRNA:   3'- gaGCAUCC-GGG--------CGGCCGGgAGgA-CCU- -5'
9268 5' -64 NC_002512.2 + 110167 0.66 0.675884
Target:  5'- gUCGUGcgggcgcacGGCCgGCCGGCCgCUUCUcgcgcgcaGGGg -3'
miRNA:   3'- gAGCAU---------CCGGgCGGCCGG-GAGGA--------CCU- -5'
9268 5' -64 NC_002512.2 + 43446 0.66 0.666497
Target:  5'- gUCGUcgguguacaggAGGCCCaGCCGGCCgagcacggCgUGGAa -3'
miRNA:   3'- gAGCA-----------UCCGGG-CGGCCGGga------GgACCU- -5'
9268 5' -64 NC_002512.2 + 108904 0.66 0.666497
Target:  5'- gUCG-GGGCCCguucGCCGGUgCUgCUGGu -3'
miRNA:   3'- gAGCaUCCGGG----CGGCCGgGAgGACCu -5'
9268 5' -64 NC_002512.2 + 87855 0.66 0.657086
Target:  5'- -gCGgcGGgUCGCCGGCCC-CCggccgcGGAa -3'
miRNA:   3'- gaGCauCCgGGCGGCCGGGaGGa-----CCU- -5'
9268 5' -64 NC_002512.2 + 108546 0.66 0.657086
Target:  5'- -gCGgagaAGGUCCGCCgGGCCUUCCgaccGGu -3'
miRNA:   3'- gaGCa---UCCGGGCGG-CCGGGAGGa---CCu -5'
9268 5' -64 NC_002512.2 + 147117 0.66 0.657086
Target:  5'- gUCGaacGCCCGCCGGaCCCaCCUGa- -3'
miRNA:   3'- gAGCaucCGGGCGGCC-GGGaGGACcu -5'
9268 5' -64 NC_002512.2 + 222874 0.66 0.657086
Target:  5'- -cCGgcaAGGCCCuG-CGGCUCUCCUGcGAc -3'
miRNA:   3'- gaGCa--UCCGGG-CgGCCGGGAGGAC-CU- -5'
9268 5' -64 NC_002512.2 + 34572 0.66 0.650487
Target:  5'- gUCGUAGGCgcaccugagcucgcgCCcuucggcGCCGGCCC-CCgcggGGAa -3'
miRNA:   3'- gAGCAUCCG---------------GG-------CGGCCGGGaGGa---CCU- -5'
9268 5' -64 NC_002512.2 + 209249 0.66 0.647657
Target:  5'- gUCccGGGCCCGCuCGGCgaaccggaCCUCCUucgaGGAc -3'
miRNA:   3'- gAGcaUCCGGGCG-GCCG--------GGAGGA----CCU- -5'
9268 5' -64 NC_002512.2 + 161520 0.66 0.638219
Target:  5'- -gCGgacGGCaCCGCCGaGCCCggggaCUGGAu -3'
miRNA:   3'- gaGCau-CCG-GGCGGC-CGGGag---GACCU- -5'
9268 5' -64 NC_002512.2 + 107083 0.66 0.638219
Target:  5'- -aCGUAGGggaCCCGCCGccagggcccggcGCCCUCggGGGa -3'
miRNA:   3'- gaGCAUCC---GGGCGGC------------CGGGAGgaCCU- -5'
9268 5' -64 NC_002512.2 + 45331 0.67 0.628776
Target:  5'- gUCGgaGGGCcguCCGCCGGCCCgcgCCgccGGc -3'
miRNA:   3'- gAGCa-UCCG---GGCGGCCGGGa--GGa--CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.