miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9272 3' -61.6 NC_002512.2 + 123524 0.66 0.833613
Target:  5'- uUCCUCGUCGUCugguacuccgagucgGCGGgcgCGGacgUCgAGGGg -3'
miRNA:   3'- -AGGGGCAGCGG---------------CGCCa--GCU---AGgUCCC- -5'
9272 3' -61.6 NC_002512.2 + 92574 0.66 0.830545
Target:  5'- gCgCCGaCGCCGCGGcCGGga-GGGGc -3'
miRNA:   3'- aGgGGCaGCGGCGCCaGCUaggUCCC- -5'
9272 3' -61.6 NC_002512.2 + 75000 0.66 0.830545
Target:  5'- cUCCCCGcacacgcgCGUCGCaccgaUCGAgggCCGGGGa -3'
miRNA:   3'- -AGGGGCa-------GCGGCGcc---AGCUa--GGUCCC- -5'
9272 3' -61.6 NC_002512.2 + 134125 0.66 0.830545
Target:  5'- cCCCCGUccaggcggcCGUCGCGGcgCGcGUCCcggccggcGGGGa -3'
miRNA:   3'- aGGGGCA---------GCGGCGCCa-GC-UAGG--------UCCC- -5'
9272 3' -61.6 NC_002512.2 + 134329 0.66 0.830545
Target:  5'- gCgCCGacggacUCGCCGCGGcCGAgcUCCAGa- -3'
miRNA:   3'- aGgGGC------AGCGGCGCCaGCU--AGGUCcc -5'
9272 3' -61.6 NC_002512.2 + 82024 0.66 0.830545
Target:  5'- gUCgCCCGg-GUCGgGGUCGcgCCGGcGGc -3'
miRNA:   3'- -AG-GGGCagCGGCgCCAGCuaGGUC-CC- -5'
9272 3' -61.6 NC_002512.2 + 105584 0.66 0.830545
Target:  5'- gCCCCGaUCaGCuccgCGCGGUCGAgccgcacgCCcGGGu -3'
miRNA:   3'- aGGGGC-AG-CG----GCGCCAGCUa-------GGuCCC- -5'
9272 3' -61.6 NC_002512.2 + 226498 0.66 0.830545
Target:  5'- cUCCCC-UCGCCGCGgGUCcugCUGGcGGc -3'
miRNA:   3'- -AGGGGcAGCGGCGC-CAGcuaGGUC-CC- -5'
9272 3' -61.6 NC_002512.2 + 143539 0.66 0.829774
Target:  5'- gCCUCGUCGCCGuCGG-CGG-CCGcgcgucuccccgcGGGc -3'
miRNA:   3'- aGGGGCAGCGGC-GCCaGCUaGGU-------------CCC- -5'
9272 3' -61.6 NC_002512.2 + 205617 0.66 0.829774
Target:  5'- aUgCCGUCGCCGCcGUCcuUCCugcccgcGGGGg -3'
miRNA:   3'- aGgGGCAGCGGCGcCAGcuAGG-------UCCC- -5'
9272 3' -61.6 NC_002512.2 + 224672 0.66 0.829774
Target:  5'- uUUCCCGcCGCCGuCGGcuggcccgCGGUCCugcccgcccugcuGGGGc -3'
miRNA:   3'- -AGGGGCaGCGGC-GCCa-------GCUAGG-------------UCCC- -5'
9272 3' -61.6 NC_002512.2 + 94630 0.66 0.828228
Target:  5'- gCCUCGUCGagCGCGGcgcggacgacggccUCGAggcggcCCGGGGc -3'
miRNA:   3'- aGGGGCAGCg-GCGCC--------------AGCUa-----GGUCCC- -5'
9272 3' -61.6 NC_002512.2 + 222582 0.66 0.825897
Target:  5'- -gCCCGcCGUCGCGGagGAggccuguccggcccCCGGGGc -3'
miRNA:   3'- agGGGCaGCGGCGCCagCUa-------------GGUCCC- -5'
9272 3' -61.6 NC_002512.2 + 80665 0.66 0.825897
Target:  5'- -gUCCGUCGgucCCGCGGcggcggCGAcgggggcgagcggcgUCCGGGGg -3'
miRNA:   3'- agGGGCAGC---GGCGCCa-----GCU---------------AGGUCCC- -5'
9272 3' -61.6 NC_002512.2 + 224352 0.66 0.822768
Target:  5'- gCgCCGggGUCGCGGgcgggagaccUCGGUCCGGGa -3'
miRNA:   3'- aGgGGCagCGGCGCC----------AGCUAGGUCCc -5'
9272 3' -61.6 NC_002512.2 + 189231 0.66 0.822768
Target:  5'- aUCCguCCGUCGCCgucGCGGaCGucaccgUCGGGGa -3'
miRNA:   3'- -AGG--GGCAGCGG---CGCCaGCua----GGUCCC- -5'
9272 3' -61.6 NC_002512.2 + 203673 0.66 0.822768
Target:  5'- gUCUCCGUCGCCaCGGU-GGUCCc--- -3'
miRNA:   3'- -AGGGGCAGCGGcGCCAgCUAGGuccc -5'
9272 3' -61.6 NC_002512.2 + 110655 0.66 0.822768
Target:  5'- gCCgCCGcUCGaCCGCGGgcagcCGGUCCuGGu -3'
miRNA:   3'- aGG-GGC-AGC-GGCGCCa----GCUAGGuCCc -5'
9272 3' -61.6 NC_002512.2 + 175533 0.66 0.822768
Target:  5'- aCCCCGcUCGUCaGCGGUU--UCCAGa- -3'
miRNA:   3'- aGGGGC-AGCGG-CGCCAGcuAGGUCcc -5'
9272 3' -61.6 NC_002512.2 + 105531 0.66 0.822768
Target:  5'- aCCCCGgCGCCcgGgGGUCGAagaUCAGGu -3'
miRNA:   3'- aGGGGCaGCGG--CgCCAGCUa--GGUCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.