miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9272 5' -56 NC_002512.2 + 176381 0.66 0.96908
Target:  5'- aUCCCaccAUCUCUUCGAUCGuccGCG-CCg -3'
miRNA:   3'- cAGGGcc-UAGAGGAGCUAGU---CGCuGG- -5'
9272 5' -56 NC_002512.2 + 202267 0.66 0.96908
Target:  5'- -gCCCGGAgcgucUCUCCgCGcUguGgGACCg -3'
miRNA:   3'- caGGGCCU-----AGAGGaGCuAguCgCUGG- -5'
9272 5' -56 NC_002512.2 + 80276 0.66 0.968207
Target:  5'- -cCCCGGAcucucccccgcgcaUgUCCUCGucGUCGGCGGUCu -3'
miRNA:   3'- caGGGCCU--------------AgAGGAGC--UAGUCGCUGG- -5'
9272 5' -56 NC_002512.2 + 189590 0.66 0.966409
Target:  5'- --gCCGGG--UCCUCGGgacgacguucgugcgCGGCGGCCg -3'
miRNA:   3'- cagGGCCUagAGGAGCUa--------------GUCGCUGG- -5'
9272 5' -56 NC_002512.2 + 100709 0.66 0.966102
Target:  5'- -gUCCGGGUCUgCUgGAagaccaccacgCAGCGAUCg -3'
miRNA:   3'- caGGGCCUAGAgGAgCUa----------GUCGCUGG- -5'
9272 5' -56 NC_002512.2 + 173260 0.66 0.966102
Target:  5'- uUCCgCGGAUCUCUUCGGcguuccgacgcUCAcCGuCCg -3'
miRNA:   3'- cAGG-GCCUAGAGGAGCU-----------AGUcGCuGG- -5'
9272 5' -56 NC_002512.2 + 35975 0.66 0.966102
Target:  5'- aGUCCgGGAcgcgaUCCgcCGAccgCGGCGACCc -3'
miRNA:   3'- -CAGGgCCUag---AGGa-GCUa--GUCGCUGG- -5'
9272 5' -56 NC_002512.2 + 126121 0.66 0.966102
Target:  5'- uGUCgCCGGuucgagAUCUCCUCG--UAGCG-CCu -3'
miRNA:   3'- -CAG-GGCC------UAGAGGAGCuaGUCGCuGG- -5'
9272 5' -56 NC_002512.2 + 85205 0.66 0.966102
Target:  5'- gGUCgCCGGGUCgucgUCCUCGcUC-GCccgGACCg -3'
miRNA:   3'- -CAG-GGCCUAG----AGGAGCuAGuCG---CUGG- -5'
9272 5' -56 NC_002512.2 + 218150 0.66 0.966102
Target:  5'- -cUCCGGAUacgUCCUCGAgacCGG-GACCc -3'
miRNA:   3'- caGGGCCUAg--AGGAGCUa--GUCgCUGG- -5'
9272 5' -56 NC_002512.2 + 73824 0.66 0.966102
Target:  5'- -gCCCGGcGUCgaugagCCUCGccguGUC-GCGACCc -3'
miRNA:   3'- caGGGCC-UAGa-----GGAGC----UAGuCGCUGG- -5'
9272 5' -56 NC_002512.2 + 178932 0.66 0.965171
Target:  5'- uUCCaCGGGgacguguuucagcaUCUUCUUGAUCcacgccgcGGCGGCCc -3'
miRNA:   3'- cAGG-GCCU--------------AGAGGAGCUAG--------UCGCUGG- -5'
9272 5' -56 NC_002512.2 + 3421 0.66 0.964222
Target:  5'- -cCCCGGc-CUCCUCccgccucgcggggcuGGUCGGUGACg -3'
miRNA:   3'- caGGGCCuaGAGGAG---------------CUAGUCGCUGg -5'
9272 5' -56 NC_002512.2 + 130913 0.66 0.962928
Target:  5'- -gUCCGGGUCUCaagcgCGGUCGGC--CCg -3'
miRNA:   3'- caGGGCCUAGAGga---GCUAGUCGcuGG- -5'
9272 5' -56 NC_002512.2 + 117998 0.66 0.962928
Target:  5'- gGUgCUGGAUUgCCUCGAggcccUCA-CGACCa -3'
miRNA:   3'- -CAgGGCCUAGaGGAGCU-----AGUcGCUGG- -5'
9272 5' -56 NC_002512.2 + 90474 0.66 0.962928
Target:  5'- gGUCCCcGAUCaccggggcgUCCUCGAcgggaUCGG-GGCCg -3'
miRNA:   3'- -CAGGGcCUAG---------AGGAGCU-----AGUCgCUGG- -5'
9272 5' -56 NC_002512.2 + 126604 0.66 0.962928
Target:  5'- gGUCCCggcGGAUCUCgUCGAg-GGUcACCu -3'
miRNA:   3'- -CAGGG---CCUAGAGgAGCUagUCGcUGG- -5'
9272 5' -56 NC_002512.2 + 64165 0.66 0.962928
Target:  5'- uUCCCGGAUa----CGAaCAGCGACUa -3'
miRNA:   3'- cAGGGCCUAgaggaGCUaGUCGCUGG- -5'
9272 5' -56 NC_002512.2 + 153237 0.66 0.959899
Target:  5'- cGUCCCGGG-CUCCcuggcaaacccgaugCGAUgCGGCGGguCCu -3'
miRNA:   3'- -CAGGGCCUaGAGGa--------------GCUA-GUCGCU--GG- -5'
9272 5' -56 NC_002512.2 + 180820 0.66 0.959553
Target:  5'- -cUCgGGAUCgCCUUGGcguccgccgUCAGUGACCu -3'
miRNA:   3'- caGGgCCUAGaGGAGCU---------AGUCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.