miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9273 3' -56 NC_002512.2 + 142272 0.66 0.946338
Target:  5'- gUCGUCCGGGCcGggGAcGgCgUCGAc -3'
miRNA:   3'- aAGCGGGUCCGaCuuCUaCaGgAGCU- -5'
9273 3' -56 NC_002512.2 + 67590 0.66 0.946338
Target:  5'- cUUGCCCGucgagacGgaGggGAUGUCCUgCGAg -3'
miRNA:   3'- aAGCGGGUc------CgaCuuCUACAGGA-GCU- -5'
9273 3' -56 NC_002512.2 + 3545 0.66 0.941917
Target:  5'- --aGCCCGGGUaGAAGAUccgucugccGUCC-CGAg -3'
miRNA:   3'- aagCGGGUCCGaCUUCUA---------CAGGaGCU- -5'
9273 3' -56 NC_002512.2 + 163668 0.66 0.941917
Target:  5'- -cCGCCagcuGGCcGggGAcGUCCUCGc -3'
miRNA:   3'- aaGCGGgu--CCGaCuuCUaCAGGAGCu -5'
9273 3' -56 NC_002512.2 + 102215 0.66 0.932384
Target:  5'- aUCGCCgC-GGCcGGAGcgGcCCUCGAc -3'
miRNA:   3'- aAGCGG-GuCCGaCUUCuaCaGGAGCU- -5'
9273 3' -56 NC_002512.2 + 175353 0.66 0.92727
Target:  5'- -gCGCCUccuGGUagUGggGAUGUCCcgguUCGAu -3'
miRNA:   3'- aaGCGGGu--CCG--ACuuCUACAGG----AGCU- -5'
9273 3' -56 NC_002512.2 + 77490 0.67 0.916343
Target:  5'- aUCGCCCuguGGGCUcccccAGAUGUCUaCGAc -3'
miRNA:   3'- aAGCGGG---UCCGAcu---UCUACAGGaGCU- -5'
9273 3' -56 NC_002512.2 + 33096 0.67 0.904492
Target:  5'- gUCGCCCA-GCUGAuAGAcgcaGUCCUCc- -3'
miRNA:   3'- aAGCGGGUcCGACU-UCUa---CAGGAGcu -5'
9273 3' -56 NC_002512.2 + 220780 0.67 0.904492
Target:  5'- --gGUCCAuggaccuGCUGggGAUcGUCCUCGAc -3'
miRNA:   3'- aagCGGGUc------CGACuuCUA-CAGGAGCU- -5'
9273 3' -56 NC_002512.2 + 147809 0.67 0.898224
Target:  5'- -gCGCCCGuGGCUcGAGAg--CCUCGGg -3'
miRNA:   3'- aaGCGGGU-CCGAcUUCUacaGGAGCU- -5'
9273 3' -56 NC_002512.2 + 82686 0.67 0.898224
Target:  5'- -cCGCUCGGGCUGucGgcGUCCgugcgCGGc -3'
miRNA:   3'- aaGCGGGUCCGACuuCuaCAGGa----GCU- -5'
9273 3' -56 NC_002512.2 + 73231 0.67 0.898224
Target:  5'- gUCGUCgCGGGC-GAAGGUccCCUCGAa -3'
miRNA:   3'- aAGCGG-GUCCGaCUUCUAcaGGAGCU- -5'
9273 3' -56 NC_002512.2 + 113224 0.68 0.88974
Target:  5'- cUCGCCCGGGgaGAcgggcacggcagcaGGAg--CCUCGGc -3'
miRNA:   3'- aAGCGGGUCCgaCU--------------UCUacaGGAGCU- -5'
9273 3' -56 NC_002512.2 + 222661 0.68 0.885017
Target:  5'- -cCGgCCGGGCcGAGGGgcgCCUCGAg -3'
miRNA:   3'- aaGCgGGUCCGaCUUCUacaGGAGCU- -5'
9273 3' -56 NC_002512.2 + 205062 0.68 0.88227
Target:  5'- --gGCCCGgaccuacuGGCUGGAGAgcggcggcgauccGUCCUCGGg -3'
miRNA:   3'- aagCGGGU--------CCGACUUCUa------------CAGGAGCU- -5'
9273 3' -56 NC_002512.2 + 137450 0.68 0.870939
Target:  5'- gUUCGCUCAGGgacagGAacAGGUgGUCCUCGGg -3'
miRNA:   3'- -AAGCGGGUCCga---CU--UCUA-CAGGAGCU- -5'
9273 3' -56 NC_002512.2 + 32086 0.68 0.870939
Target:  5'- gUCGCCgAuGGCggcccGGGUGUCCUCGc -3'
miRNA:   3'- aAGCGGgU-CCGacu--UCUACAGGAGCu -5'
9273 3' -56 NC_002512.2 + 15006 0.68 0.864329
Target:  5'- cUUGUCCGGGCUGAGGcagacguaggccagGUCCUgGGc -3'
miRNA:   3'- aAGCGGGUCCGACUUCua------------CAGGAgCU- -5'
9273 3' -56 NC_002512.2 + 128507 0.68 0.856028
Target:  5'- -gCGCCCGGGUggGGAGAU-UCCUCc- -3'
miRNA:   3'- aaGCGGGUCCGa-CUUCUAcAGGAGcu -5'
9273 3' -56 NC_002512.2 + 109109 0.69 0.8322
Target:  5'- gUCaGCgCCAGGCUGAGGGUcugCCUCu- -3'
miRNA:   3'- aAG-CG-GGUCCGACUUCUAca-GGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.