miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9273 5' -51.5 NC_002512.2 + 90561 0.66 0.998424
Target:  5'- --aGGAcGAGGGCGAgggCGACggCCCCGg -3'
miRNA:   3'- gcaUCU-CUUUCGCUga-GUUGa-GGGGC- -5'
9273 5' -51.5 NC_002512.2 + 132591 0.66 0.998396
Target:  5'- --cAGGGGuucGGCGagcagacGCUCGGcCUCCCCGa -3'
miRNA:   3'- gcaUCUCUu--UCGC-------UGAGUU-GAGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 102300 0.66 0.998396
Target:  5'- cCGUGGAcGAcgccuacaucgccGAGCGGCUgGGCcggCUCCGg -3'
miRNA:   3'- -GCAUCU-CU-------------UUCGCUGAgUUGa--GGGGC- -5'
9273 5' -51.5 NC_002512.2 + 226267 0.66 0.99812
Target:  5'- --aGGAGAGAGCucacgaccgcgGGCUCuGCgccugUCCCCGa -3'
miRNA:   3'- gcaUCUCUUUCG-----------CUGAGuUG-----AGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 187023 0.66 0.99812
Target:  5'- gCGUGGAGGAGGagGACgaggacCGGgcCUCCCUGg -3'
miRNA:   3'- -GCAUCUCUUUCg-CUGa-----GUU--GAGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 44808 0.66 0.99812
Target:  5'- aCGUAGA---AGCGGCcgAGCUCCCgGu -3'
miRNA:   3'- -GCAUCUcuuUCGCUGagUUGAGGGgC- -5'
9273 5' -51.5 NC_002512.2 + 94070 0.66 0.99812
Target:  5'- gCGgcGGGAAcGgGACcgUCGGCgUCCCCGc -3'
miRNA:   3'- -GCauCUCUUuCgCUG--AGUUG-AGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 16822 0.66 0.99812
Target:  5'- aCGUAGcccgcggggcugGGcAGGGCGAuCUCGAUcCCCCGc -3'
miRNA:   3'- -GCAUC------------UC-UUUCGCU-GAGUUGaGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 53861 0.66 0.99812
Target:  5'- --aGGAGAGGGgGACcgUCcgUUCCCCa -3'
miRNA:   3'- gcaUCUCUUUCgCUG--AGuuGAGGGGc -5'
9273 5' -51.5 NC_002512.2 + 63465 0.66 0.998087
Target:  5'- aCGgcGGGGAAGagggcaGGCUCGGCaggaccaUCCCCc -3'
miRNA:   3'- -GCauCUCUUUCg-----CUGAGUUG-------AGGGGc -5'
9273 5' -51.5 NC_002512.2 + 120993 0.66 0.998087
Target:  5'- ---cGAGAGGGCGuACgggucguUCGACgaUCCCCGg -3'
miRNA:   3'- gcauCUCUUUCGC-UG-------AGUUG--AGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 226726 0.66 0.997768
Target:  5'- aGUAGAGAcAGCGA---GGCUgUCCCGg -3'
miRNA:   3'- gCAUCUCUuUCGCUgagUUGA-GGGGC- -5'
9273 5' -51.5 NC_002512.2 + 127354 0.66 0.997768
Target:  5'- gGUAGGGAAaccGGgGGCcUGAC-CCCCGa -3'
miRNA:   3'- gCAUCUCUU---UCgCUGaGUUGaGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 201878 0.66 0.997768
Target:  5'- ---cGAGGAcggcGGCGGCUUcuccguCUCCCCGc -3'
miRNA:   3'- gcauCUCUU----UCGCUGAGuu----GAGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 123496 0.66 0.997768
Target:  5'- gGUccAGggGGUG-CUCGGC-CCCCGg -3'
miRNA:   3'- gCAucUCuuUCGCuGAGUUGaGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 134289 0.66 0.997768
Target:  5'- --gGGAGAAGGCGGCgacgacgacguUCggUUUCCUGa -3'
miRNA:   3'- gcaUCUCUUUCGCUG-----------AGuuGAGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 92363 0.66 0.997362
Target:  5'- gGUGGAGAAGGUG-CUg---UCCCCGu -3'
miRNA:   3'- gCAUCUCUUUCGCuGAguugAGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 184395 0.66 0.997362
Target:  5'- gCGUGGccgccgccGGggGGCG-CUCGGCcuUCUCCGu -3'
miRNA:   3'- -GCAUC--------UCuuUCGCuGAGUUG--AGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 133239 0.66 0.997362
Target:  5'- ---cGGGAGGGCGGCg--GCgCCCCGg -3'
miRNA:   3'- gcauCUCUUUCGCUGaguUGaGGGGC- -5'
9273 5' -51.5 NC_002512.2 + 128393 0.66 0.997362
Target:  5'- --cGGGGAGAGCGACUCG----UCCGg -3'
miRNA:   3'- gcaUCUCUUUCGCUGAGUugagGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.