miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9274 3' -58.6 NC_002512.2 + 125017 0.66 0.910572
Target:  5'- cGCCGucGGCGccgcccgcUGCGCGAGGUCCCu -3'
miRNA:   3'- -UGGCccCUGCaua-----GCGUGUUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 106791 0.66 0.910572
Target:  5'- gUCGGGGuCGggGUCGaCgucgggaggggGCGAGGCCgCCg -3'
miRNA:   3'- uGGCCCCuGCa-UAGC-G-----------UGUUCCGG-GG- -5'
9274 3' -58.6 NC_002512.2 + 25943 0.66 0.910572
Target:  5'- gGCCGGGGGC------CACgAGGGCCUCg -3'
miRNA:   3'- -UGGCCCCUGcauagcGUG-UUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 97000 0.66 0.910572
Target:  5'- cGCCGGGGACGccGUCGUcgauuuccuccGCGGacGGCagcauCCCu -3'
miRNA:   3'- -UGGCCCCUGCa-UAGCG-----------UGUU--CCG-----GGG- -5'
9274 3' -58.6 NC_002512.2 + 6594 0.66 0.910572
Target:  5'- gACCGGcGGcaccAUGUAgcugCGCGCGGcGUCCCg -3'
miRNA:   3'- -UGGCC-CC----UGCAUa---GCGUGUUcCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 95551 0.66 0.910572
Target:  5'- gACCGaGaACGUGUCGUuCAgcAGGUCCCu -3'
miRNA:   3'- -UGGCcCcUGCAUAGCGuGU--UCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 72779 0.66 0.910572
Target:  5'- cGCCGGgagGGACG--UCGC-CGggacGGGCCCg -3'
miRNA:   3'- -UGGCC---CCUGCauAGCGuGU----UCCGGGg -5'
9274 3' -58.6 NC_002512.2 + 104773 0.66 0.910572
Target:  5'- cCCGGucGGACGg--CGCgugGCGGGGUCCg -3'
miRNA:   3'- uGGCC--CCUGCauaGCG---UGUUCCGGGg -5'
9274 3' -58.6 NC_002512.2 + 155611 0.66 0.910572
Target:  5'- -aCGGGGACGUGcggCGCcuguGCGAGGagagCCg -3'
miRNA:   3'- ugGCCCCUGCAUa--GCG----UGUUCCgg--GG- -5'
9274 3' -58.6 NC_002512.2 + 11035 0.66 0.910001
Target:  5'- cCCGGGcGAccuCGUcggcgaaGUCGCagaGCAGGGCCgCg -3'
miRNA:   3'- uGGCCC-CU---GCA-------UAGCG---UGUUCCGGgG- -5'
9274 3' -58.6 NC_002512.2 + 135862 0.66 0.904759
Target:  5'- cGCCGaGGAgcUGg--CGgACGAGGCCCUg -3'
miRNA:   3'- -UGGCcCCU--GCauaGCgUGUUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 186811 0.66 0.904759
Target:  5'- cGCCGcgccccGGGACcgGUGccUCG-GCGAGGCCCUg -3'
miRNA:   3'- -UGGC------CCCUG--CAU--AGCgUGUUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 158287 0.66 0.904759
Target:  5'- aGCUGGaGGGCGUGcCgGCcccCAAGGCCgCg -3'
miRNA:   3'- -UGGCC-CCUGCAUaG-CGu--GUUCCGGgG- -5'
9274 3' -58.6 NC_002512.2 + 5172 0.66 0.904759
Target:  5'- gACCGGGG-CGg--CG-GCc-GGCCCCa -3'
miRNA:   3'- -UGGCCCCuGCauaGCgUGuuCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 83610 0.66 0.904759
Target:  5'- cGCCGGGGuuggacacgGCGUucaggCGgccCACcAGGUCCCg -3'
miRNA:   3'- -UGGCCCC---------UGCAua---GC---GUGuUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 117991 0.66 0.904759
Target:  5'- uGCuCGGGGuGCuggAUUGCcuCGAGGCCCUc -3'
miRNA:   3'- -UG-GCCCC-UGca-UAGCGu-GUUCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 26639 0.66 0.904759
Target:  5'- uACCGGGuGAUccaccagCGCACGAGGUCg- -3'
miRNA:   3'- -UGGCCC-CUGcaua---GCGUGUUCCGGgg -5'
9274 3' -58.6 NC_002512.2 + 146811 0.66 0.904759
Target:  5'- gGCCcGGGACcUGgagaccuucgCGCGCGAGGUCgCCu -3'
miRNA:   3'- -UGGcCCCUGcAUa---------GCGUGUUCCGG-GG- -5'
9274 3' -58.6 NC_002512.2 + 128847 0.66 0.904759
Target:  5'- cACCGcucGGGCGc--CGCGCG-GGCCCUg -3'
miRNA:   3'- -UGGCc--CCUGCauaGCGUGUuCCGGGG- -5'
9274 3' -58.6 NC_002512.2 + 126730 0.66 0.904759
Target:  5'- cGCCGGGcGCGgcgCGUGCcucuuGGCCCg -3'
miRNA:   3'- -UGGCCCcUGCauaGCGUGuu---CCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.