miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9274 5' -55.8 NC_002512.2 + 157668 0.66 0.970328
Target:  5'- gAAGAGCauggaGuUCGGCugcugauggacuuccGCGCCUUCGCCUc -3'
miRNA:   3'- gUUCUCGg----C-AGCUG---------------UGUGGAGGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 52019 0.66 0.970328
Target:  5'- ----cGCCGUCGACgauccgcgaggagcuGCugGCCUCCAUCg -3'
miRNA:   3'- guucuCGGCAGCUG---------------UG--UGGAGGUGGg -5'
9274 5' -55.8 NC_002512.2 + 140613 0.66 0.969189
Target:  5'- cCGGGAGacgcuccugucCUGUCG-CAuCACCUUCAUCCg -3'
miRNA:   3'- -GUUCUC-----------GGCAGCuGU-GUGGAGGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 136283 0.66 0.969189
Target:  5'- cCAGGGGCacguagaagaCGUUGcACGCcugguucaggACCUCCACCg -3'
miRNA:   3'- -GUUCUCG----------GCAGC-UGUG----------UGGAGGUGGg -5'
9274 5' -55.8 NC_002512.2 + 139242 0.66 0.969189
Target:  5'- cCGAGA-CCG-CGGCcgcgGCGCCgggucgcgCCGCCCg -3'
miRNA:   3'- -GUUCUcGGCaGCUG----UGUGGa-------GGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 3133 0.66 0.969189
Target:  5'- --uGA-CCGgCcGCACGCCUCCGCCg -3'
miRNA:   3'- guuCUcGGCaGcUGUGUGGAGGUGGg -5'
9274 5' -55.8 NC_002512.2 + 172243 0.66 0.969189
Target:  5'- -uAGAGCgcugGUCGGuCugcuCGCCUCaCGCCCg -3'
miRNA:   3'- guUCUCGg---CAGCU-Gu---GUGGAG-GUGGG- -5'
9274 5' -55.8 NC_002512.2 + 117891 0.66 0.969189
Target:  5'- cCGGGGGCC--CGuCGCugCUCCACggCCa -3'
miRNA:   3'- -GUUCUCGGcaGCuGUGugGAGGUG--GG- -5'
9274 5' -55.8 NC_002512.2 + 129824 0.66 0.969189
Target:  5'- ----cGUCGUCGGCGcCGCCgCC-CCCg -3'
miRNA:   3'- guucuCGGCAGCUGU-GUGGaGGuGGG- -5'
9274 5' -55.8 NC_002512.2 + 218788 0.66 0.969189
Target:  5'- aCGAG-GCCGaggcggaCGACAcCGCCgUCCGCuCCg -3'
miRNA:   3'- -GUUCuCGGCa------GCUGU-GUGG-AGGUG-GG- -5'
9274 5' -55.8 NC_002512.2 + 149294 0.66 0.969189
Target:  5'- gGAGGGCgagauCGUCGAC-CGCCgcgcgggcucgCCGCCg -3'
miRNA:   3'- gUUCUCG-----GCAGCUGuGUGGa----------GGUGGg -5'
9274 5' -55.8 NC_002512.2 + 195832 0.66 0.969189
Target:  5'- ----cGCCGUCGugggGCACGCCUCgagcaACCg -3'
miRNA:   3'- guucuCGGCAGC----UGUGUGGAGg----UGGg -5'
9274 5' -55.8 NC_002512.2 + 155480 0.66 0.969189
Target:  5'- --cGAGuUCGUCGGCAC-CgUCCggACCCc -3'
miRNA:   3'- guuCUC-GGCAGCUGUGuGgAGG--UGGG- -5'
9274 5' -55.8 NC_002512.2 + 15565 0.66 0.966205
Target:  5'- -cGGAGUCGUCGGC-CugCUCgugcggCACgCCg -3'
miRNA:   3'- guUCUCGGCAGCUGuGugGAG------GUG-GG- -5'
9274 5' -55.8 NC_002512.2 + 130922 0.66 0.966205
Target:  5'- uCAAGcGCgGUCGGCcCGguuCC-CCGCCCg -3'
miRNA:   3'- -GUUCuCGgCAGCUGuGU---GGaGGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 92813 0.66 0.966205
Target:  5'- -cGGGGCCuGUUcccgGGCgcgGCGCCUCCuCCCu -3'
miRNA:   3'- guUCUCGG-CAG----CUG---UGUGGAGGuGGG- -5'
9274 5' -55.8 NC_002512.2 + 136493 0.66 0.966205
Target:  5'- aAGGuGCaCGcguUCGGCGCGCCcugCgGCCCg -3'
miRNA:   3'- gUUCuCG-GC---AGCUGUGUGGa--GgUGGG- -5'
9274 5' -55.8 NC_002512.2 + 224949 0.66 0.966205
Target:  5'- -cGGuGUCGcUCGGCucCGCCgUCUACCCg -3'
miRNA:   3'- guUCuCGGC-AGCUGu-GUGG-AGGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 169127 0.66 0.966205
Target:  5'- ---cGGUCGUCG-CGCuCCucgUCCGCCCg -3'
miRNA:   3'- guucUCGGCAGCuGUGuGG---AGGUGGG- -5'
9274 5' -55.8 NC_002512.2 + 170997 0.66 0.965896
Target:  5'- ---cGGUCGgCGACACGCCgcuuuccUCCGCCa -3'
miRNA:   3'- guucUCGGCaGCUGUGUGG-------AGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.