miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9276 3' -55.4 NC_002512.2 + 226209 0.66 0.971773
Target:  5'- cGCGCgGCCgGGCcAUCACCgGGGAGccggaGCg -3'
miRNA:   3'- -UGCG-CGG-CCGcUAGUGGaCUUUCa----CG- -5'
9276 3' -55.4 NC_002512.2 + 80816 0.66 0.971773
Target:  5'- cGCGCGCCucGGCG-UCGgCgGAGGG-GCc -3'
miRNA:   3'- -UGCGCGG--CCGCuAGUgGaCUUUCaCG- -5'
9276 3' -55.4 NC_002512.2 + 107371 0.66 0.971773
Target:  5'- gGCGCGCCGGgGAgccagACCgagaccGAGAGguucagGCc -3'
miRNA:   3'- -UGCGCGGCCgCUag---UGGa-----CUUUCa-----CG- -5'
9276 3' -55.4 NC_002512.2 + 103896 0.66 0.971773
Target:  5'- uACGCGUCGGUacgcgacguugaGGUCgggaACC-GAGGGUGUg -3'
miRNA:   3'- -UGCGCGGCCG------------CUAG----UGGaCUUUCACG- -5'
9276 3' -55.4 NC_002512.2 + 48349 0.66 0.971773
Target:  5'- uCGCGCgGGCGugcgagCugCUGAAcG-GCa -3'
miRNA:   3'- uGCGCGgCCGCua----GugGACUUuCaCG- -5'
9276 3' -55.4 NC_002512.2 + 200668 0.66 0.971773
Target:  5'- cCGCgGCCGGCGuUCGggUaGAAGGUGUa -3'
miRNA:   3'- uGCG-CGGCCGCuAGUggA-CUUUCACG- -5'
9276 3' -55.4 NC_002512.2 + 92569 0.66 0.971773
Target:  5'- -aGCGCCGGUaGGUCGCuCUcGGuacguGGUGUc -3'
miRNA:   3'- ugCGCGGCCG-CUAGUG-GA-CUu----UCACG- -5'
9276 3' -55.4 NC_002512.2 + 52964 0.66 0.971773
Target:  5'- gGCGCGCCGGa----GCCUGAacgagacguucGAGcgGCu -3'
miRNA:   3'- -UGCGCGGCCgcuagUGGACU-----------UUCa-CG- -5'
9276 3' -55.4 NC_002512.2 + 71578 0.66 0.968941
Target:  5'- uCGCGCCGGaCGAccgCGgCCuUGggGGccgGCa -3'
miRNA:   3'- uGCGCGGCC-GCUa--GU-GG-ACuuUCa--CG- -5'
9276 3' -55.4 NC_002512.2 + 143575 0.66 0.968941
Target:  5'- gGCGgGCCGGCGGagagggaggCGCCcuugcGUGCg -3'
miRNA:   3'- -UGCgCGGCCGCUa--------GUGGacuuuCACG- -5'
9276 3' -55.4 NC_002512.2 + 143526 0.66 0.965912
Target:  5'- gGCGCGCCuGGCGGccucgUCGCCgucGgcGGccGCg -3'
miRNA:   3'- -UGCGCGG-CCGCU-----AGUGGa--CuuUCa-CG- -5'
9276 3' -55.4 NC_002512.2 + 222978 0.66 0.965912
Target:  5'- uACGCGCCGGUcuUCcucgaccuGCCgGGGAGcgGCa -3'
miRNA:   3'- -UGCGCGGCCGcuAG--------UGGaCUUUCa-CG- -5'
9276 3' -55.4 NC_002512.2 + 120191 0.66 0.965912
Target:  5'- --cUGUCGGUGA-CGCC-GggGGUGCa -3'
miRNA:   3'- ugcGCGGCCGCUaGUGGaCuuUCACG- -5'
9276 3' -55.4 NC_002512.2 + 90126 0.66 0.965912
Target:  5'- gGCGC-CCGGUGcgCgaggGCCgcgGAGaAGUGCg -3'
miRNA:   3'- -UGCGcGGCCGCuaG----UGGa--CUU-UCACG- -5'
9276 3' -55.4 NC_002512.2 + 70740 0.66 0.965912
Target:  5'- aGCGCGcCCGGCcgccUCACUUGGAGcgGCc -3'
miRNA:   3'- -UGCGC-GGCCGcu--AGUGGACUUUcaCG- -5'
9276 3' -55.4 NC_002512.2 + 192608 0.66 0.965912
Target:  5'- gGCGCGCgCGGCGGgcgacggcggccUCACCUucuacgGCa -3'
miRNA:   3'- -UGCGCG-GCCGCU------------AGUGGAcuuucaCG- -5'
9276 3' -55.4 NC_002512.2 + 30862 0.66 0.965912
Target:  5'- gACGCGCC-GCGGUU-CCUGAcgcagGAG-GCc -3'
miRNA:   3'- -UGCGCGGcCGCUAGuGGACU-----UUCaCG- -5'
9276 3' -55.4 NC_002512.2 + 221914 0.66 0.962682
Target:  5'- -gGCGCCagcgcGCGAUgGCCUG---GUGCg -3'
miRNA:   3'- ugCGCGGc----CGCUAgUGGACuuuCACG- -5'
9276 3' -55.4 NC_002512.2 + 221169 0.66 0.962682
Target:  5'- gGCGCGCgCGGcCGAcCgACCUcGGAGUGg -3'
miRNA:   3'- -UGCGCG-GCC-GCUaG-UGGAcUUUCACg -5'
9276 3' -55.4 NC_002512.2 + 138019 0.66 0.962682
Target:  5'- cCGCGCCGGaCGGcgGCCUcGGGG-GCa -3'
miRNA:   3'- uGCGCGGCC-GCUagUGGAcUUUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.