miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9276 5' -60.8 NC_002512.2 + 91016 0.65 0.84021
Target:  5'- cGGAgGCCcaucaGCGGGauacggggacugguGCGGg-AGCGGGUg -3'
miRNA:   3'- -CCUgUGGa----CGCCC--------------UGCCagUCGCCCA- -5'
9276 5' -60.8 NC_002512.2 + 112563 0.65 0.84021
Target:  5'- cGGCGCCaGCGGGAacccgccguccgucCGGUgGuaguGCGGGa -3'
miRNA:   3'- cCUGUGGaCGCCCU--------------GCCAgU----CGCCCa -5'
9276 5' -60.8 NC_002512.2 + 82037 0.66 0.83483
Target:  5'- gGGucGCGCCgGCGG--CGGUCgcGGCGGGa -3'
miRNA:   3'- -CC--UGUGGaCGCCcuGCCAG--UCGCCCa -5'
9276 5' -60.8 NC_002512.2 + 169252 0.66 0.83483
Target:  5'- gGGGCcuguCCUGUGGGugGGagccaaguGUGGGa -3'
miRNA:   3'- -CCUGu---GGACGCCCugCCagu-----CGCCCa -5'
9276 5' -60.8 NC_002512.2 + 169182 0.66 0.83483
Target:  5'- gGGGCcuguCCUGUGGGugGGagccaaguGUGGGa -3'
miRNA:   3'- -CCUGu---GGACGCCCugCCagu-----CGCCCa -5'
9276 5' -60.8 NC_002512.2 + 87814 0.66 0.83483
Target:  5'- cGAgGCggGCGGG-CGGUCGGaGGGg -3'
miRNA:   3'- cCUgUGgaCGCCCuGCCAGUCgCCCa -5'
9276 5' -60.8 NC_002512.2 + 57100 0.66 0.83483
Target:  5'- uGAC-CgaGCGGGACGaggaAGCGGGg -3'
miRNA:   3'- cCUGuGgaCGCCCUGCcag-UCGCCCa -5'
9276 5' -60.8 NC_002512.2 + 227934 0.66 0.83483
Target:  5'- cGACGCCgGCGGacgaGGCGGgggagcGCGGGg -3'
miRNA:   3'- cCUGUGGaCGCC----CUGCCagu---CGCCCa -5'
9276 5' -60.8 NC_002512.2 + 155368 0.66 0.83483
Target:  5'- cGGCGCUcgagGuCGGGGCGGcggcgcCGGCGGGc -3'
miRNA:   3'- cCUGUGGa---C-GCCCUGCCa-----GUCGCCCa -5'
9276 5' -60.8 NC_002512.2 + 11444 0.66 0.83483
Target:  5'- nGGACGCC-GC-GGACGGg-GGcCGGGg -3'
miRNA:   3'- -CCUGUGGaCGcCCUGCCagUC-GCCCa -5'
9276 5' -60.8 NC_002512.2 + 181576 0.66 0.83483
Target:  5'- gGGucCGUCUGCGGcGGCaGGggCGGCGGGUc -3'
miRNA:   3'- -CCu-GUGGACGCC-CUG-CCa-GUCGCCCA- -5'
9276 5' -60.8 NC_002512.2 + 183971 0.66 0.83483
Target:  5'- cGGGCgucgucGCCUGuCGGGGCGGaCAGCu--- -3'
miRNA:   3'- -CCUG------UGGAC-GCCCUGCCaGUCGccca -5'
9276 5' -60.8 NC_002512.2 + 190076 0.66 0.83483
Target:  5'- ---gGCC-GCGGc-CGGUCAGCGGGc -3'
miRNA:   3'- ccugUGGaCGCCcuGCCAGUCGCCCa -5'
9276 5' -60.8 NC_002512.2 + 119354 0.66 0.834054
Target:  5'- cGGGCcuucuccGCCcGCGGGAUGGUggacgacgCGGCGGc- -3'
miRNA:   3'- -CCUG-------UGGaCGCCCUGCCA--------GUCGCCca -5'
9276 5' -60.8 NC_002512.2 + 3417 0.66 0.832499
Target:  5'- cGGGCcccggccuccucccGCCUcGCGGGGCuGGUCGGUGacGGc -3'
miRNA:   3'- -CCUG--------------UGGA-CGCCCUG-CCAGUCGC--CCa -5'
9276 5' -60.8 NC_002512.2 + 165975 0.66 0.827006
Target:  5'- -aGCugCgGCGGGGCGGUCGGUu--- -3'
miRNA:   3'- ccUGugGaCGCCCUGCCAGUCGccca -5'
9276 5' -60.8 NC_002512.2 + 120106 0.66 0.827006
Target:  5'- uGGuCGCCcaggUGCGGGugGaaCuGCGGGUu -3'
miRNA:   3'- -CCuGUGG----ACGCCCugCcaGuCGCCCA- -5'
9276 5' -60.8 NC_002512.2 + 35260 0.66 0.827006
Target:  5'- cGGGCAgguccCCcGCGGcGACGGccgCGGCGGcGg -3'
miRNA:   3'- -CCUGU-----GGaCGCC-CUGCCa--GUCGCC-Ca -5'
9276 5' -60.8 NC_002512.2 + 200355 0.66 0.827006
Target:  5'- cGGACg---GgGGGACGGggCGGgGGGUg -3'
miRNA:   3'- -CCUGuggaCgCCCUGCCa-GUCgCCCA- -5'
9276 5' -60.8 NC_002512.2 + 201751 0.66 0.827006
Target:  5'- gGGGCGCCgaucccGgGGGACGGgagGGacgaGGGUg -3'
miRNA:   3'- -CCUGUGGa-----CgCCCUGCCag-UCg---CCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.