miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 3' -54 NC_002512.2 + 190048 0.66 0.988668
Target:  5'- cCGACGaggUCAUGuucauCCAcGAGCUGGcCGc -3'
miRNA:   3'- -GCUGCa--GGUACu----GGUaCUCGACCaGC- -5'
9278 3' -54 NC_002512.2 + 6877 0.66 0.988668
Target:  5'- aCGAccCGUCCcugGGCCGUGccgcuccccGGCaGGUCGa -3'
miRNA:   3'- -GCU--GCAGGua-CUGGUAC---------UCGaCCAGC- -5'
9278 3' -54 NC_002512.2 + 24669 0.66 0.988668
Target:  5'- cCGAucucCGUCCcgGGCCGcucGGGCgggGGUCu -3'
miRNA:   3'- -GCU----GCAGGuaCUGGUa--CUCGa--CCAGc -5'
9278 3' -54 NC_002512.2 + 55018 0.66 0.988668
Target:  5'- uCGACGUC---GAUCGaGAGCcGGUCGg -3'
miRNA:   3'- -GCUGCAGguaCUGGUaCUCGaCCAGC- -5'
9278 3' -54 NC_002512.2 + 211942 0.66 0.987218
Target:  5'- gGACGUCCGUGGac--GAGagGGUCGg -3'
miRNA:   3'- gCUGCAGGUACUgguaCUCgaCCAGC- -5'
9278 3' -54 NC_002512.2 + 40437 0.66 0.987217
Target:  5'- gCGACGaagagcugguagUCgGUGGCCAUGgcGGCgGGUCc -3'
miRNA:   3'- -GCUGC------------AGgUACUGGUAC--UCGaCCAGc -5'
9278 3' -54 NC_002512.2 + 5036 0.66 0.984429
Target:  5'- cCGugG-CCAUGGCCGUGgagguauacgcguccAGCccgcccgcggcguUGGUCGu -3'
miRNA:   3'- -GCugCaGGUACUGGUAC---------------UCG-------------ACCAGC- -5'
9278 3' -54 NC_002512.2 + 3423 0.66 0.982003
Target:  5'- cCGGCcUCCucccGCCucgcgGGGCUGGUCGg -3'
miRNA:   3'- -GCUGcAGGuac-UGGua---CUCGACCAGC- -5'
9278 3' -54 NC_002512.2 + 138028 0.67 0.979951
Target:  5'- aCGGCGgCCucggGGgCAUGAGCcgggacUGGUCGa -3'
miRNA:   3'- -GCUGCaGGua--CUgGUACUCG------ACCAGC- -5'
9278 3' -54 NC_002512.2 + 164249 0.67 0.97773
Target:  5'- uCGGCG-CCGUGGCgG-GGGCcgucgGGUCGa -3'
miRNA:   3'- -GCUGCaGGUACUGgUaCUCGa----CCAGC- -5'
9278 3' -54 NC_002512.2 + 155487 0.67 0.977729
Target:  5'- aGACGgCCAUGGCCGccgcucuccUGGaagacCUGGUCGa -3'
miRNA:   3'- gCUGCaGGUACUGGU---------ACUc----GACCAGC- -5'
9278 3' -54 NC_002512.2 + 95251 0.67 0.975332
Target:  5'- gGGCGUCCGgagGGCCGcgcggcuccUGAacgGCggGGUCGg -3'
miRNA:   3'- gCUGCAGGUa--CUGGU---------ACU---CGa-CCAGC- -5'
9278 3' -54 NC_002512.2 + 88445 0.67 0.975332
Target:  5'- aGGCGUCCcgGACCAgcaGGCgGGg-- -3'
miRNA:   3'- gCUGCAGGuaCUGGUac-UCGaCCagc -5'
9278 3' -54 NC_002512.2 + 95509 0.67 0.972751
Target:  5'- aCGACGUCCcgGACCucgaacagcucGUGGacgguGCgGGUCu -3'
miRNA:   3'- -GCUGCAGGuaCUGG-----------UACU-----CGaCCAGc -5'
9278 3' -54 NC_002512.2 + 32226 0.67 0.972751
Target:  5'- gGGCGUCCAccucgucgGGCCA-GAGUUuGUCGg -3'
miRNA:   3'- gCUGCAGGUa-------CUGGUaCUCGAcCAGC- -5'
9278 3' -54 NC_002512.2 + 152743 0.67 0.969981
Target:  5'- aGGCGUUCc-GGCCggGAGCccGGUCGa -3'
miRNA:   3'- gCUGCAGGuaCUGGuaCUCGa-CCAGC- -5'
9278 3' -54 NC_002512.2 + 195350 0.67 0.967015
Target:  5'- cCGGCG-CCggGAacCCcgGGuGCUGGUCGg -3'
miRNA:   3'- -GCUGCaGGuaCU--GGuaCU-CGACCAGC- -5'
9278 3' -54 NC_002512.2 + 67273 0.68 0.963847
Target:  5'- aCGuCGcCCAUGACgCGcUGGGC-GGUCGa -3'
miRNA:   3'- -GCuGCaGGUACUG-GU-ACUCGaCCAGC- -5'
9278 3' -54 NC_002512.2 + 108313 0.68 0.963847
Target:  5'- uGugGUCCAUGGCgGcgcgcggcGGGC-GGUCGg -3'
miRNA:   3'- gCugCAGGUACUGgUa-------CUCGaCCAGC- -5'
9278 3' -54 NC_002512.2 + 200499 0.68 0.963847
Target:  5'- gCGGCGUCCuccGACCG-GGGCUcGUCc -3'
miRNA:   3'- -GCUGCAGGua-CUGGUaCUCGAcCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.