miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9278 5' -54.8 NC_002512.2 + 100623 0.67 0.949858
Target:  5'- -aCGACAGCUUCUGGagcgGCaggGGCUu -3'
miRNA:   3'- ucGCUGUCGAAGACCga--UGgcaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 179439 0.67 0.949858
Target:  5'- cGCGGcCGGCgucuUCUGGacauCCGgcGCCg -3'
miRNA:   3'- uCGCU-GUCGa---AGACCgau-GGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 138956 0.67 0.949858
Target:  5'- cGGCGGCGGCcgCgccGGCc-CCGUucgcGGCCg -3'
miRNA:   3'- -UCGCUGUCGaaGa--CCGauGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 117032 0.67 0.949858
Target:  5'- cGCGGCcaucgAGCUguUCgGGCUgcuGCCGUucguGCCg -3'
miRNA:   3'- uCGCUG-----UCGA--AGaCCGA---UGGCAu---CGG- -5'
9278 5' -54.8 NC_002512.2 + 2928 0.67 0.949858
Target:  5'- --gGACAGCUUCuUGGCcucCCGcgcGGCCu -3'
miRNA:   3'- ucgCUGUCGAAG-ACCGau-GGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 12860 0.67 0.949858
Target:  5'- cGUGAC-GCUggaCaGGCUGCUGaAGCCg -3'
miRNA:   3'- uCGCUGuCGAa--GaCCGAUGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 74558 0.67 0.949858
Target:  5'- cGGCGACgggAGCgaggUUGGCgagAUCGUccucGGCCa -3'
miRNA:   3'- -UCGCUG---UCGaa--GACCGa--UGGCA----UCGG- -5'
9278 5' -54.8 NC_002512.2 + 99937 0.67 0.949858
Target:  5'- cGGCGuCGGCUgCU-GCUGCCGccgguGCCu -3'
miRNA:   3'- -UCGCuGUCGAaGAcCGAUGGCau---CGG- -5'
9278 5' -54.8 NC_002512.2 + 130280 0.67 0.949858
Target:  5'- cGCGACgAGCgcggGGCccgggacgUGCCGUAcGCCg -3'
miRNA:   3'- uCGCUG-UCGaagaCCG--------AUGGCAU-CGG- -5'
9278 5' -54.8 NC_002512.2 + 94648 0.67 0.953866
Target:  5'- cGGaCGACGGCcUCgaGGCggcCCGgGGCCg -3'
miRNA:   3'- -UC-GCUGUCGaAGa-CCGau-GGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 180563 0.67 0.953866
Target:  5'- uGCGGCgGGCUcCggUGGCUcucuaucaggGCCGUGGCg -3'
miRNA:   3'- uCGCUG-UCGAaG--ACCGA----------UGGCAUCGg -5'
9278 5' -54.8 NC_002512.2 + 180196 0.67 0.953866
Target:  5'- aGGCGaaGCAGUUcgacaugcaCUGGCUGCCGgcccgcGCCc -3'
miRNA:   3'- -UCGC--UGUCGAa--------GACCGAUGGCau----CGG- -5'
9278 5' -54.8 NC_002512.2 + 91915 0.67 0.953866
Target:  5'- gGGCGGCGGCgcgccgUC-GGCgGCCGacuUGGUCu -3'
miRNA:   3'- -UCGCUGUCGa-----AGaCCGaUGGC---AUCGG- -5'
9278 5' -54.8 NC_002512.2 + 27754 0.67 0.953866
Target:  5'- cGCGGCGGC----GGCcgagACCGgcGCCa -3'
miRNA:   3'- uCGCUGUCGaagaCCGa---UGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 224980 0.67 0.957653
Target:  5'- gGGCGGCGGCggC-GGCgcccucuucCCGUcGCCg -3'
miRNA:   3'- -UCGCUGUCGaaGaCCGau-------GGCAuCGG- -5'
9278 5' -54.8 NC_002512.2 + 154592 0.67 0.957653
Target:  5'- gGGCGACGGCggcaUCgucGCcGCCGccGCCg -3'
miRNA:   3'- -UCGCUGUCGa---AGac-CGaUGGCauCGG- -5'
9278 5' -54.8 NC_002512.2 + 214353 0.66 0.961221
Target:  5'- cAGCGAgAGCcagagcgccUUCUGGCU-CCG-GGaCCa -3'
miRNA:   3'- -UCGCUgUCG---------AAGACCGAuGGCaUC-GG- -5'
9278 5' -54.8 NC_002512.2 + 204714 0.66 0.961221
Target:  5'- cGGCGACGGCg---GGCccggGgCGgggGGCCg -3'
miRNA:   3'- -UCGCUGUCGaagaCCGa---UgGCa--UCGG- -5'
9278 5' -54.8 NC_002512.2 + 220284 0.66 0.961221
Target:  5'- cGuCGGCAGCUUCcuGCccGCCG-AGCCg -3'
miRNA:   3'- uC-GCUGUCGAAGacCGa-UGGCaUCGG- -5'
9278 5' -54.8 NC_002512.2 + 170381 0.66 0.964575
Target:  5'- cGCGGCGccgcGCUgcacuUCUGGCacagcagGCUGUAGUCc -3'
miRNA:   3'- uCGCUGU----CGA-----AGACCGa------UGGCAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.