miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9279 3' -61.8 NC_002512.2 + 139768 0.66 0.834536
Target:  5'- cCGGugCuguCCGAcaUCGuCCggcgcacccuccaggCCGGCGGGGg -3'
miRNA:   3'- aGCCugG---GGCU--AGC-GGa--------------GGCUGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 163653 0.66 0.833778
Target:  5'- aCGGGCggCCCGucacCGCCagCUGGcCGGGGa -3'
miRNA:   3'- aGCCUG--GGGCua--GCGGa-GGCU-GCCCC- -5'
9279 3' -61.8 NC_002512.2 + 116751 0.66 0.833778
Target:  5'- cCGGcGCCCCGcgcgCGUCUCCGAgGaGaGGc -3'
miRNA:   3'- aGCC-UGGGGCua--GCGGAGGCUgC-C-CC- -5'
9279 3' -61.8 NC_002512.2 + 112944 0.66 0.833778
Target:  5'- aUGGcGCCCCGGUCgaGCC-CCGAgucguCGGGc -3'
miRNA:   3'- aGCC-UGGGGCUAG--CGGaGGCU-----GCCCc -5'
9279 3' -61.8 NC_002512.2 + 128372 0.66 0.833778
Target:  5'- gCGGugCCCccugUGCUa-CGACGGGGa -3'
miRNA:   3'- aGCCugGGGcua-GCGGagGCUGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 120994 0.66 0.833778
Target:  5'- aCGGGCCCCGAcgGCagagCGaaGCGGGGc -3'
miRNA:   3'- aGCCUGGGGCUagCGgag-GC--UGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 164242 0.66 0.833778
Target:  5'- aUGGugUUCGG-CGCCg-UGGCGGGGg -3'
miRNA:   3'- aGCCugGGGCUaGCGGagGCUGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 140875 0.66 0.833017
Target:  5'- cUCGGAUcgcgcugCCCGAcgucccCGCgCUCCGggucgacgACGGGGa -3'
miRNA:   3'- -AGCCUG-------GGGCUa-----GCG-GAGGC--------UGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 7284 0.66 0.832256
Target:  5'- gCGaGGCCCCGGgggccggacagGCCUCCuccgcGACGGcGGg -3'
miRNA:   3'- aGC-CUGGGGCUag---------CGGAGG-----CUGCC-CC- -5'
9279 3' -61.8 NC_002512.2 + 198740 0.66 0.826107
Target:  5'- cCGGGCCa-GGUCcgcgaagacgGCCUUCGucuCGGGGa -3'
miRNA:   3'- aGCCUGGggCUAG----------CGGAGGCu--GCCCC- -5'
9279 3' -61.8 NC_002512.2 + 146066 0.66 0.826107
Target:  5'- cCGGGCCCgGA-CGCCgccgCCGcCGGc- -3'
miRNA:   3'- aGCCUGGGgCUaGCGGa---GGCuGCCcc -5'
9279 3' -61.8 NC_002512.2 + 201658 0.66 0.826107
Target:  5'- aCGG-CCCCGGcCGCgguuccuuCUUCGGCGaGGGc -3'
miRNA:   3'- aGCCuGGGGCUaGCG--------GAGGCUGC-CCC- -5'
9279 3' -61.8 NC_002512.2 + 93911 0.66 0.826107
Target:  5'- cCGaACCCCGcgC-CCUCCcaGACGGGc -3'
miRNA:   3'- aGCcUGGGGCuaGcGGAGG--CUGCCCc -5'
9279 3' -61.8 NC_002512.2 + 11223 0.66 0.826107
Target:  5'- cCGGuguGCCCgGGUaucCGCCUCCGuccgcCGGGc -3'
miRNA:   3'- aGCC---UGGGgCUA---GCGGAGGCu----GCCCc -5'
9279 3' -61.8 NC_002512.2 + 191326 0.66 0.826107
Target:  5'- gUCGGGaCgCGggUGCCgUCCGcgACGGGGg -3'
miRNA:   3'- -AGCCUgGgGCuaGCGG-AGGC--UGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 186694 0.66 0.826107
Target:  5'- cCGGAaCUCGGccuUCGUCUgCGGCGGGu -3'
miRNA:   3'- aGCCUgGGGCU---AGCGGAgGCUGCCCc -5'
9279 3' -61.8 NC_002512.2 + 37918 0.66 0.826107
Target:  5'- gUCGGuguGCCCCGcUUGcCCUCCGggGCGaGGa -3'
miRNA:   3'- -AGCC---UGGGGCuAGC-GGAGGC--UGC-CCc -5'
9279 3' -61.8 NC_002512.2 + 133801 0.66 0.826107
Target:  5'- -gGGACgaCGGUCGCg-CCGgguGCGGGGg -3'
miRNA:   3'- agCCUGggGCUAGCGgaGGC---UGCCCC- -5'
9279 3' -61.8 NC_002512.2 + 32045 0.66 0.826107
Target:  5'- -aGGGCCUcccgccgccccuCGAUgCaCCUCCGGCaGGGGg -3'
miRNA:   3'- agCCUGGG------------GCUA-GcGGAGGCUG-CCCC- -5'
9279 3' -61.8 NC_002512.2 + 98352 0.66 0.821433
Target:  5'- gCGG-CCCCuc-CGCCUCgucucccuccggcguCGugGGGGa -3'
miRNA:   3'- aGCCuGGGGcuaGCGGAG---------------GCugCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.