miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9279 5' -57.7 NC_002512.2 + 110641 0.66 0.90582
Target:  5'- gUCGCCG-GGAuccAGCCGCCGcUCg---- -3'
miRNA:   3'- aAGCGGCgCCU---UCGGCGGU-AGaacag -5'
9279 5' -57.7 NC_002512.2 + 125016 0.66 0.90582
Target:  5'- -gCGCCGuCGGc-GCCGCCcgCUgcgcgagGUCc -3'
miRNA:   3'- aaGCGGC-GCCuuCGGCGGuaGAa------CAG- -5'
9279 5' -57.7 NC_002512.2 + 124973 0.66 0.90582
Target:  5'- -cCGUCGCGGAcuUCGCCAaCcUGUCc -3'
miRNA:   3'- aaGCGGCGCCUucGGCGGUaGaACAG- -5'
9279 5' -57.7 NC_002512.2 + 131060 0.66 0.90582
Target:  5'- -gCGCCGCgccGGAGGCCGauCCGUCg---- -3'
miRNA:   3'- aaGCGGCG---CCUUCGGC--GGUAGaacag -5'
9279 5' -57.7 NC_002512.2 + 189609 0.66 0.905214
Target:  5'- gUUCGUgCGCGGcGGCCGCacgcgauCGUCgcgGUCg -3'
miRNA:   3'- -AAGCG-GCGCCuUCGGCG-------GUAGaa-CAG- -5'
9279 5' -57.7 NC_002512.2 + 169154 0.66 0.89966
Target:  5'- -cCGCCGCGGucGCgGUUAUacauaCUUGUUg -3'
miRNA:   3'- aaGCGGCGCCuuCGgCGGUA-----GAACAG- -5'
9279 5' -57.7 NC_002512.2 + 99622 0.66 0.89966
Target:  5'- cUCGUCGCGGucGUCGCCcUCg---- -3'
miRNA:   3'- aAGCGGCGCCuuCGGCGGuAGaacag -5'
9279 5' -57.7 NC_002512.2 + 38932 0.66 0.89966
Target:  5'- -cCGCCGCGGcGGgCGCCcgCgugcgcccggGUCu -3'
miRNA:   3'- aaGCGGCGCCuUCgGCGGuaGaa--------CAG- -5'
9279 5' -57.7 NC_002512.2 + 79945 0.66 0.89966
Target:  5'- -gCGgCGCGGggGuCCGCCugccGUCggaagcgGUCg -3'
miRNA:   3'- aaGCgGCGCCuuC-GGCGG----UAGaa-----CAG- -5'
9279 5' -57.7 NC_002512.2 + 41332 0.66 0.89966
Target:  5'- gUCGCCGCcGGAGCUGcCCGagUUGg- -3'
miRNA:   3'- aAGCGGCGcCUUCGGC-GGUagAACag -5'
9279 5' -57.7 NC_002512.2 + 107870 0.66 0.893278
Target:  5'- -cCG-CGUGGAGGCCGUCGUCa---- -3'
miRNA:   3'- aaGCgGCGCCUUCGGCGGUAGaacag -5'
9279 5' -57.7 NC_002512.2 + 104750 0.66 0.893278
Target:  5'- gUCGCCGUccucGucGCCGUCGUCccgGUCg -3'
miRNA:   3'- aAGCGGCGc---CuuCGGCGGUAGaa-CAG- -5'
9279 5' -57.7 NC_002512.2 + 17316 0.66 0.893278
Target:  5'- gUCGCCGCcGucGUCGUCGUCcccGUCg -3'
miRNA:   3'- aAGCGGCGcCuuCGGCGGUAGaa-CAG- -5'
9279 5' -57.7 NC_002512.2 + 51077 0.66 0.893278
Target:  5'- -gCGCUGuCGGAccaacuGGCCGCCAagagGUCg -3'
miRNA:   3'- aaGCGGC-GCCU------UCGGCGGUagaaCAG- -5'
9279 5' -57.7 NC_002512.2 + 41090 0.66 0.893278
Target:  5'- -cCGCCGCGaucGggGCCGCCGa------ -3'
miRNA:   3'- aaGCGGCGC---CuuCGGCGGUagaacag -5'
9279 5' -57.7 NC_002512.2 + 198977 0.66 0.893278
Target:  5'- -gCGUCGCGuGAuGuCCGCCAggUUGUCc -3'
miRNA:   3'- aaGCGGCGC-CUuC-GGCGGUagAACAG- -5'
9279 5' -57.7 NC_002512.2 + 112769 0.66 0.886678
Target:  5'- -cCGCCGCGGGGccccguGCCGCUGUgcCggGUCc -3'
miRNA:   3'- aaGCGGCGCCUU------CGGCGGUA--GaaCAG- -5'
9279 5' -57.7 NC_002512.2 + 139803 0.66 0.886678
Target:  5'- --gGCCgGCGGggGCCuCgGUCgggUGUCc -3'
miRNA:   3'- aagCGG-CGCCuuCGGcGgUAGa--ACAG- -5'
9279 5' -57.7 NC_002512.2 + 16995 0.66 0.886678
Target:  5'- -gCGCCGacuCGGuccauGGCCGCCGUCUc--- -3'
miRNA:   3'- aaGCGGC---GCCu----UCGGCGGUAGAacag -5'
9279 5' -57.7 NC_002512.2 + 216207 0.66 0.886678
Target:  5'- -cCGCCGCGGccGUCGCC-UC--GUCc -3'
miRNA:   3'- aaGCGGCGCCuuCGGCGGuAGaaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.