miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9280 5' -58.7 NC_002512.2 + 152399 0.66 0.840913
Target:  5'- uGUUCgacGCGGGCGagcguGCGCGGGAu- -3'
miRNA:   3'- -CAGGa--UGCCCGUggau-CGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 21447 0.66 0.832931
Target:  5'- cGUCCgacucgauCGGGgGCC-GGCGCcGGGAGc -3'
miRNA:   3'- -CAGGau------GCCCgUGGaUCGCG-CCCUUu -5'
9280 5' -58.7 NC_002512.2 + 83966 0.66 0.832931
Target:  5'- aGUCCcggcgGCGGauGCCcGGCGCGGGGc- -3'
miRNA:   3'- -CAGGa----UGCCcgUGGaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 47713 0.66 0.832931
Target:  5'- aUCCUGCGcGcCGCCU--CGCGGGAGGa -3'
miRNA:   3'- cAGGAUGCcC-GUGGAucGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 228127 0.67 0.828058
Target:  5'- cGUCgUGCuGGGCGCCgacgGGCGCGagcucagguccacgcGGAGc -3'
miRNA:   3'- -CAGgAUG-CCCGUGGa---UCGCGC---------------CCUUu -5'
9280 5' -58.7 NC_002512.2 + 166443 0.67 0.824776
Target:  5'- cGUCCUccggggGCGacGGCGCCgggcucgAGgGCGGGGAc -3'
miRNA:   3'- -CAGGA------UGC--CCGUGGa------UCgCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 148423 0.67 0.824776
Target:  5'- cUCCUGCGGG-ACCgc-CGgGGGAGGa -3'
miRNA:   3'- cAGGAUGCCCgUGGaucGCgCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 98088 0.67 0.816458
Target:  5'- uGUCCgagcggaugACGGGgAC--GGCGCGGGAc- -3'
miRNA:   3'- -CAGGa--------UGCCCgUGgaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 82194 0.67 0.816458
Target:  5'- cGUCCgccguCGGGCcggcguCCUcccGGgGCGGGAAGc -3'
miRNA:   3'- -CAGGau---GCCCGu-----GGA---UCgCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 90110 0.67 0.815616
Target:  5'- uGUCUUcuggaucGCGGGCGCCcgguGCGCGaGGGc- -3'
miRNA:   3'- -CAGGA-------UGCCCGUGGau--CGCGC-CCUuu -5'
9280 5' -58.7 NC_002512.2 + 67647 0.67 0.781681
Target:  5'- cGUCC-ACGGGCcCCcGGaCGCGGGc-- -3'
miRNA:   3'- -CAGGaUGCCCGuGGaUC-GCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 101884 0.67 0.781681
Target:  5'- -gCC-GCGGGCGaa-AGCGCGGGGAc -3'
miRNA:   3'- caGGaUGCCCGUggaUCGCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 32565 0.67 0.781681
Target:  5'- -gCCgcCGGGCGCCgcgGGUGcCGGGGu- -3'
miRNA:   3'- caGGauGCCCGUGGa--UCGC-GCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 5209 0.68 0.772651
Target:  5'- -aCC-GCGGGCcaGCCgacGGCgGCGGGAAAg -3'
miRNA:   3'- caGGaUGCCCG--UGGa--UCG-CGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 169154 0.68 0.772651
Target:  5'- gGUCUUuggGCGGGaGCCaAGUGUGGGAGGg -3'
miRNA:   3'- -CAGGA---UGCCCgUGGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 120609 0.68 0.772651
Target:  5'- ----aGCGGGCGCCggugAGaGCGGGAGg -3'
miRNA:   3'- caggaUGCCCGUGGa---UCgCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 128848 0.68 0.763504
Target:  5'- -aCCgcuCGGGCGCC--GCGCGGGc-- -3'
miRNA:   3'- caGGau-GCCCGUGGauCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 121397 0.68 0.763504
Target:  5'- -gCCggACGGagccGCGCCUGGCGUGGaGGGAg -3'
miRNA:   3'- caGGa-UGCC----CGUGGAUCGCGCC-CUUU- -5'
9280 5' -58.7 NC_002512.2 + 196396 0.68 0.744887
Target:  5'- -gCC-GCGGGU--CUGGCGCGGGGAc -3'
miRNA:   3'- caGGaUGCCCGugGAUCGCGCCCUUu -5'
9280 5' -58.7 NC_002512.2 + 134704 0.68 0.743946
Target:  5'- cGUCCUcucGCGGGCgcucuccGCCUAGCGa-GGAc- -3'
miRNA:   3'- -CAGGA---UGCCCG-------UGGAUCGCgcCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.