Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9281 | 3' | -53.2 | NC_002512.2 | + | 227960 | 0.68 | 0.961221 |
Target: 5'- cGCGGGGgagccggaGAGGAggGCCCCGgcgccgagGGCc -3' miRNA: 3'- cCGCCUCag------UUCCUa-UGGGGUaa------CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 182957 | 0.68 | 0.967721 |
Target: 5'- cGGUGGAugaaGUCGAaguGGuagGCCCCGgucGGCa -3' miRNA: 3'- -CCGCCU----CAGUU---CCua-UGGGGUaa-CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 187685 | 0.68 | 0.970663 |
Target: 5'- gGGCGGAGgCAccGGGAacccgaACCCCcgacccUGGCu -3' miRNA: 3'- -CCGCCUCaGU--UCCUa-----UGGGGua----ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 219830 | 0.68 | 0.967721 |
Target: 5'- aGGgGGucGGUCGGGGGguccGgCCCGggGGCg -3' miRNA: 3'- -CCgCC--UCAGUUCCUa---UgGGGUaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 18919 | 0.67 | 0.978332 |
Target: 5'- aGGCGcGAcaCAGGGcccggacgACCUCGUUGGCc -3' miRNA: 3'- -CCGC-CUcaGUUCCua------UGGGGUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 28081 | 0.67 | 0.980525 |
Target: 5'- cGGCGGAGaCGGcGGAgaggucgccGCCCCGUccGCg -3' miRNA: 3'- -CCGCCUCaGUU-CCUa--------UGGGGUAacCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 118389 | 0.67 | 0.978332 |
Target: 5'- cGGCGGAcGUCc-GGAcuCUCCGUcuacUGGCa -3' miRNA: 3'- -CCGCCU-CAGuuCCUauGGGGUA----ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 130852 | 0.67 | 0.978332 |
Target: 5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3' miRNA: 3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 133646 | 0.67 | 0.980734 |
Target: 5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3' miRNA: 3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 187268 | 0.67 | 0.986113 |
Target: 5'- uGGCGGAcGUCGccucgaaGUGCCCCcg-GGCu -3' miRNA: 3'- -CCGCCU-CAGUucc----UAUGGGGuaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 181999 | 0.67 | 0.986113 |
Target: 5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3' miRNA: 3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 177274 | 0.67 | 0.978332 |
Target: 5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3' miRNA: 3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 159359 | 0.67 | 0.980525 |
Target: 5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3' miRNA: 3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 229524 | 0.67 | 0.980525 |
Target: 5'- cGGCGGAGaaAAGGAgaACgCCGgggagccgGGCg -3' miRNA: 3'- -CCGCCUCagUUCCUa-UGgGGUaa------CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 136390 | 0.67 | 0.982547 |
Target: 5'- cGGCcaGAG-CAAGGAgggaaccaACCCCAUcUGGUa -3' miRNA: 3'- -CCGc-CUCaGUUCCUa-------UGGGGUA-ACCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 121434 | 0.67 | 0.98331 |
Target: 5'- cGCGGAGUCGgccccggagcccugaGGGGUccGCCCCGc--GCc -3' miRNA: 3'- cCGCCUCAGU---------------UCCUA--UGGGGUaacCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 87516 | 0.67 | 0.984407 |
Target: 5'- cGCGGAGcCGAuggcGGGUAUCuCCGUUcucGGCu -3' miRNA: 3'- cCGCCUCaGUU----CCUAUGG-GGUAA---CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 201082 | 0.67 | 0.985449 |
Target: 5'- uGCGGGGUCuGGGAcagcaUGCCCacgaagaugaGGCa -3' miRNA: 3'- cCGCCUCAGuUCCU-----AUGGGguaa------CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 127659 | 0.67 | 0.986113 |
Target: 5'- cGGaCGGccGGUCGAGGGccGCUCCGgccgcGGCg -3' miRNA: 3'- -CC-GCC--UCAGUUCCUa-UGGGGUaa---CCG- -5' |
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9281 | 3' | -53.2 | NC_002512.2 | + | 96626 | 0.67 | 0.982547 |
Target: 5'- cGGgGGAGggCGAGGAaACCgCGaccggGGCg -3' miRNA: 3'- -CCgCCUCa-GUUCCUaUGGgGUaa---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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