miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 5' -53 NC_002512.2 + 32075 0.72 0.82995
Target:  5'- cGGCagggGGGGUcgCCGAUGGCGg- -3'
miRNA:   3'- cUCGguuaCCCCAuaGGCUACUGCau -5'
9281 5' -53 NC_002512.2 + 45058 0.67 0.971578
Target:  5'- cGAGUCGAUGGaGGUGUCgCGGccGGCGc- -3'
miRNA:   3'- -CUCGGUUACC-CCAUAG-GCUa-CUGCau -5'
9281 5' -53 NC_002512.2 + 45092 0.67 0.979177
Target:  5'- cGGCCAccGGGucGUGUCCGAUccGCGUAu -3'
miRNA:   3'- cUCGGUuaCCC--CAUAGGCUAc-UGCAU- -5'
9281 5' -53 NC_002512.2 + 75848 1.07 0.010352
Target:  5'- gGAGCCAAUGGGGUAUCCGAUGACGUAg -3'
miRNA:   3'- -CUCGGUUACCCCAUAGGCUACUGCAU- -5'
9281 5' -53 NC_002512.2 + 76067 0.71 0.862068
Target:  5'- cGAGCCAAUGGGaUAUCCGuaaACGg- -3'
miRNA:   3'- -CUCGGUUACCCcAUAGGCuacUGCau -5'
9281 5' -53 NC_002512.2 + 76114 0.69 0.946522
Target:  5'- gGGGgCGccGGGGUGgugUCGAUGACGUc -3'
miRNA:   3'- -CUCgGUuaCCCCAUa--GGCUACUGCAu -5'
9281 5' -53 NC_002512.2 + 89800 0.66 0.990972
Target:  5'- ---aCAGgacGGGGUcgCCGAUGACGc- -3'
miRNA:   3'- cucgGUUa--CCCCAuaGGCUACUGCau -5'
9281 5' -53 NC_002512.2 + 97505 0.68 0.962164
Target:  5'- cGGCC-AUGGcGGUGUUCGGgaucgUGGCGUGc -3'
miRNA:   3'- cUCGGuUACC-CCAUAGGCU-----ACUGCAU- -5'
9281 5' -53 NC_002512.2 + 103193 0.73 0.776512
Target:  5'- uGAGCCugcccggcgaGcgGGGGUAUCCGA-GGCGg- -3'
miRNA:   3'- -CUCGG----------UuaCCCCAUAGGCUaCUGCau -5'
9281 5' -53 NC_002512.2 + 111698 0.69 0.937303
Target:  5'- cGGCCuc-GGGGUcgCgGAUGACGa- -3'
miRNA:   3'- cUCGGuuaCCCCAuaGgCUACUGCau -5'
9281 5' -53 NC_002512.2 + 131089 0.66 0.989722
Target:  5'- cGGCCGccGGGGUA-CCug-GACGUGg -3'
miRNA:   3'- cUCGGUuaCCCCAUaGGcuaCUGCAU- -5'
9281 5' -53 NC_002512.2 + 139001 0.69 0.946522
Target:  5'- aGGUCGGUGGGGaacaggggGUCCGAcGGCGg- -3'
miRNA:   3'- cUCGGUUACCCCa-------UAGGCUaCUGCau -5'
9281 5' -53 NC_002512.2 + 139811 0.66 0.986821
Target:  5'- gGGGCCucgGUcGGGUGUCCaagGACGUGg -3'
miRNA:   3'- -CUCGGu--UAcCCCAUAGGcuaCUGCAU- -5'
9281 5' -53 NC_002512.2 + 154069 0.76 0.616554
Target:  5'- -cGCCAAUGGGGUAUCCu-UGACu-- -3'
miRNA:   3'- cuCGGUUACCCCAUAGGcuACUGcau -5'
9281 5' -53 NC_002512.2 + 156438 0.72 0.821449
Target:  5'- cGGCCGGgcugGGGGgcUCCGggGGCGg- -3'
miRNA:   3'- cUCGGUUa---CCCCauAGGCuaCUGCau -5'
9281 5' -53 NC_002512.2 + 167217 0.67 0.971578
Target:  5'- cGAGCCuguguugGGGGUGagugaCGGUGACGa- -3'
miRNA:   3'- -CUCGGuua----CCCCAUag---GCUACUGCau -5'
9281 5' -53 NC_002512.2 + 191740 0.66 0.986821
Target:  5'- -cGUCGGUcGGGGUGUCCG-UGGcCGUc -3'
miRNA:   3'- cuCGGUUA-CCCCAUAGGCuACU-GCAu -5'
9281 5' -53 NC_002512.2 + 220305 0.66 0.990972
Target:  5'- cGAGCCGccGGGGgg-CCGggGGCc-- -3'
miRNA:   3'- -CUCGGUuaCCCCauaGGCuaCUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.