miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9282 3' -51.7 NC_002512.2 + 169231 0.66 0.997712
Target:  5'- gGGUGGgagccaAGUguggGAGGGgccUGUCCUGUgGGUg -3'
miRNA:   3'- -CCACC------UCAa---CUCCC---AUAGGGUAaCCG- -5'
9282 3' -51.7 NC_002512.2 + 127057 0.66 0.997471
Target:  5'- cGGcGGAGggaagcucaucGGGUAUCCCGUUcccggagcggagGGCg -3'
miRNA:   3'- -CCaCCUCaacu-------CCCAUAGGGUAA------------CCG- -5'
9282 3' -51.7 NC_002512.2 + 95281 0.66 0.997298
Target:  5'- cGGcGGGGUc--GGGU-UCCCGUcGGCg -3'
miRNA:   3'- -CCaCCUCAacuCCCAuAGGGUAaCCG- -5'
9282 3' -51.7 NC_002512.2 + 219831 0.66 0.995666
Target:  5'- --gGGGGUcggucgGGGGGUccggCCCGggGGCg -3'
miRNA:   3'- ccaCCUCAa-----CUCCCAua--GGGUaaCCG- -5'
9282 3' -51.7 NC_002512.2 + 221285 0.67 0.993306
Target:  5'- cGUGGAGggGGGGGaggCCgGggucGGCg -3'
miRNA:   3'- cCACCUCaaCUCCCauaGGgUaa--CCG- -5'
9282 3' -51.7 NC_002512.2 + 25296 0.67 0.993306
Target:  5'- uGGUGGAGUccaauccccagUcGGGGUcgCCCcaccggagGGCg -3'
miRNA:   3'- -CCACCUCA-----------AcUCCCAuaGGGuaa-----CCG- -5'
9282 3' -51.7 NC_002512.2 + 75814 0.68 0.990013
Target:  5'- gGGcGGAGUcaAGGaUAcCCCAUUGGCg -3'
miRNA:   3'- -CCaCCUCAacUCCcAUaGGGUAACCG- -5'
9282 3' -51.7 NC_002512.2 + 40874 0.68 0.983794
Target:  5'- --cGGAGggGAGGGUcgCCCGc-GGa -3'
miRNA:   3'- ccaCCUCaaCUCCCAuaGGGUaaCCg -5'
9282 3' -51.7 NC_002512.2 + 127847 0.7 0.959688
Target:  5'- --cGGAGUccgGAGcGGgAUCCCGUgGGCg -3'
miRNA:   3'- ccaCCUCAa--CUC-CCaUAGGGUAaCCG- -5'
9282 3' -51.7 NC_002512.2 + 21552 0.7 0.952055
Target:  5'- --cGGGGgUGAGGGUGUCgUAgaaGGCg -3'
miRNA:   3'- ccaCCUCaACUCCCAUAGgGUaa-CCG- -5'
9282 3' -51.7 NC_002512.2 + 160943 0.71 0.938884
Target:  5'- cGGUGGGGgggucacGAGGGgggAUCCCcccgaGGCc -3'
miRNA:   3'- -CCACCUCaa-----CUCCCa--UAGGGuaa--CCG- -5'
9282 3' -51.7 NC_002512.2 + 166598 0.72 0.923591
Target:  5'- gGGcUGGAGaagGAGGG-GUCCCAg-GGCu -3'
miRNA:   3'- -CC-ACCUCaa-CUCCCaUAGGGUaaCCG- -5'
9282 3' -51.7 NC_002512.2 + 81983 0.73 0.872488
Target:  5'- uGGUGGcGgcGGGGGcGUCUCGggGGCg -3'
miRNA:   3'- -CCACCuCaaCUCCCaUAGGGUaaCCG- -5'
9282 3' -51.7 NC_002512.2 + 104374 0.75 0.798963
Target:  5'- cGGUGGGGUUcuucguguucggGuGGGUgcgAUCCUAUUGGUc -3'
miRNA:   3'- -CCACCUCAA------------CuCCCA---UAGGGUAACCG- -5'
9282 3' -51.7 NC_002512.2 + 76032 1.15 0.004838
Target:  5'- gGGUGGAGUUGAGGGUAUCCCAUUGGCg -3'
miRNA:   3'- -CCACCUCAACUCCCAUAGGGUAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.