miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9282 5' -49.3 NC_002512.2 + 167613 0.66 0.999766
Target:  5'- -uGCCAGgcGGGA--UCCGggGugGGAa -3'
miRNA:   3'- cuCGGUUa-CCCUauAGGCauUugCCU- -5'
9282 5' -49.3 NC_002512.2 + 194759 0.66 0.999704
Target:  5'- -cGCCAGUcGGGAccugGUCCGcguccACGGGa -3'
miRNA:   3'- cuCGGUUA-CCCUa---UAGGCauu--UGCCU- -5'
9282 5' -49.3 NC_002512.2 + 56981 0.66 0.999628
Target:  5'- aGAGuccCCAcgGGGGacagCCGUGGGCGGc -3'
miRNA:   3'- -CUC---GGUuaCCCUaua-GGCAUUUGCCu -5'
9282 5' -49.3 NC_002512.2 + 32189 0.66 0.999628
Target:  5'- cGGGCC-AUGGGcaggcagggcggGUGUCCGUuga-GGAg -3'
miRNA:   3'- -CUCGGuUACCC------------UAUAGGCAuuugCCU- -5'
9282 5' -49.3 NC_002512.2 + 45269 0.66 0.999575
Target:  5'- aGAGCCAccuccuccucuggauGUaccGGGAUGUCCGgcAACa-- -3'
miRNA:   3'- -CUCGGU---------------UA---CCCUAUAGGCauUUGccu -5'
9282 5' -49.3 NC_002512.2 + 79159 0.66 0.999536
Target:  5'- cGGGCCGAcGGGAaGUCC---AACGGu -3'
miRNA:   3'- -CUCGGUUaCCCUaUAGGcauUUGCCu -5'
9282 5' -49.3 NC_002512.2 + 150186 0.66 0.999536
Target:  5'- cGGGCCugggGGGAgagggAUCCGgGAAccCGGAg -3'
miRNA:   3'- -CUCGGuua-CCCUa----UAGGCaUUU--GCCU- -5'
9282 5' -49.3 NC_002512.2 + 86807 0.66 0.999424
Target:  5'- gGAGCCGGuguacggcUGGGcaacGUGUCCGgc-AUGGAa -3'
miRNA:   3'- -CUCGGUU--------ACCC----UAUAGGCauuUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 130149 0.66 0.999424
Target:  5'- cGGCCGcgGGGc---CCGgcGGCGGGc -3'
miRNA:   3'- cUCGGUuaCCCuauaGGCauUUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 174359 0.66 0.999424
Target:  5'- -cGCCGggAUGcGGAUGgCCGaGAACGGGu -3'
miRNA:   3'- cuCGGU--UAC-CCUAUaGGCaUUUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 191740 0.66 0.999424
Target:  5'- -cGUCGGUcGGGGUGUCCGUGGcCGu- -3'
miRNA:   3'- cuCGGUUA-CCCUAUAGGCAUUuGCcu -5'
9282 5' -49.3 NC_002512.2 + 223930 0.67 0.99929
Target:  5'- cGAGCCGGacgGGGAggucgAUCCcuggGGACGGu -3'
miRNA:   3'- -CUCGGUUa--CCCUa----UAGGca--UUUGCCu -5'
9282 5' -49.3 NC_002512.2 + 64015 0.67 0.99913
Target:  5'- uAGCCcGUGaGGAaGUCCGgggagAAGCGGu -3'
miRNA:   3'- cUCGGuUAC-CCUaUAGGCa----UUUGCCu -5'
9282 5' -49.3 NC_002512.2 + 218972 0.67 0.99913
Target:  5'- -cGCCGGcUGGGAgGUCCGgcc-CGGGg -3'
miRNA:   3'- cuCGGUU-ACCCUaUAGGCauuuGCCU- -5'
9282 5' -49.3 NC_002512.2 + 33424 0.67 0.99894
Target:  5'- cGGCCgAAUGGG-UcgUCGUGAuCGGAg -3'
miRNA:   3'- cUCGG-UUACCCuAuaGGCAUUuGCCU- -5'
9282 5' -49.3 NC_002512.2 + 132850 0.67 0.998716
Target:  5'- aGGGCCuuaacggaGGGAUGcugCCGUccGCGGAg -3'
miRNA:   3'- -CUCGGuua-----CCCUAUa--GGCAuuUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 227512 0.67 0.998716
Target:  5'- cGAcCCGGggGGGAgaGUCCGgcGGCGGAc -3'
miRNA:   3'- -CUcGGUUa-CCCUa-UAGGCauUUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 39421 0.68 0.998144
Target:  5'- --aUCGAUGGGAUAUaugaCCaUGAACGGAg -3'
miRNA:   3'- cucGGUUACCCUAUA----GGcAUUUGCCU- -5'
9282 5' -49.3 NC_002512.2 + 170113 0.68 0.998111
Target:  5'- cGGCCGGuUGGGAUAggCCGUAggggucgugugcuGACGuGAa -3'
miRNA:   3'- cUCGGUU-ACCCUAUa-GGCAU-------------UUGC-CU- -5'
9282 5' -49.3 NC_002512.2 + 156516 0.68 0.997787
Target:  5'- uGGGCgGcgGGGcgcggggGUCCGgcGGCGGGa -3'
miRNA:   3'- -CUCGgUuaCCCua-----UAGGCauUUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.