miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9283 3' -50.7 NC_002512.2 + 41548 0.66 0.997873
Target:  5'- gAGGUugcggGCCUGCaCGGUggcgcgcAGGUUCUUGa-- -3'
miRNA:   3'- -UCCA-----UGGAUG-GCCA-------UCCAAGGAUauc -5'
9283 3' -50.7 NC_002512.2 + 76223 1.1 0.011966
Target:  5'- uAGGUACCUACCGGUAGGUUCCUAUAGg -3'
miRNA:   3'- -UCCAUGGAUGGCCAUCCAAGGAUAUC- -5'
9283 3' -50.7 NC_002512.2 + 76251 0.82 0.478663
Target:  5'- uAGGU-CCUACCGGUAGG-UCCUaccgGUAGg -3'
miRNA:   3'- -UCCAuGGAUGGCCAUCCaAGGA----UAUC- -5'
9283 3' -50.7 NC_002512.2 + 110571 0.68 0.990518
Target:  5'- gAGGU-CCUGCCGGgucAGGaucUCCUGa-- -3'
miRNA:   3'- -UCCAuGGAUGGCCa--UCCa--AGGAUauc -5'
9283 3' -50.7 NC_002512.2 + 153638 0.75 0.841601
Target:  5'- uAGG-ACCUACCGGUAGGa-CCUAc-- -3'
miRNA:   3'- -UCCaUGGAUGGCCAUCCaaGGAUauc -5'
9283 3' -50.7 NC_002512.2 + 153664 0.91 0.17677
Target:  5'- uAGGaACCUACCGGUAGGUaCCUAUAGc -3'
miRNA:   3'- -UCCaUGGAUGGCCAUCCAaGGAUAUC- -5'
9283 3' -50.7 NC_002512.2 + 154197 0.71 0.967273
Target:  5'- uAGGUGCCcguaggACCuaGGaUAGGUcCCUAUAGg -3'
miRNA:   3'- -UCCAUGGa-----UGG--CC-AUCCAaGGAUAUC- -5'
9283 3' -50.7 NC_002512.2 + 158548 0.72 0.929724
Target:  5'- uGGUggACCUGCUGGUGGGccgcUCCUGg-- -3'
miRNA:   3'- uCCA--UGGAUGGCCAUCCa---AGGAUauc -5'
9283 3' -50.7 NC_002512.2 + 224613 0.66 0.998785
Target:  5'- cGGUGCCgACCGGgcucgGGGUcgCCg---- -3'
miRNA:   3'- uCCAUGGaUGGCCa----UCCAa-GGauauc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.