miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9283 5' -55.5 NC_002512.2 + 132106 0.66 0.95705
Target:  5'- gACCGGggcucgAGGgCCgcCCGGUAGGc-- -3'
miRNA:   3'- aUGGCCa-----UCCaGGauGGCCAUCCaua -5'
9283 5' -55.5 NC_002512.2 + 69914 0.66 0.953225
Target:  5'- cACUGGUagcaggucgAGGUCUc-CCGGUAGGUc- -3'
miRNA:   3'- aUGGCCA---------UCCAGGauGGCCAUCCAua -5'
9283 5' -55.5 NC_002512.2 + 153294 0.66 0.949177
Target:  5'- cGCUGGgucGGUCCgggucgGCCGGUucccgcugGGGUGg -3'
miRNA:   3'- aUGGCCau-CCAGGa-----UGGCCA--------UCCAUa -5'
9283 5' -55.5 NC_002512.2 + 152871 0.66 0.949177
Target:  5'- aGCCGGUGugcgggagcGGUCC--CCGGUcGGUGa -3'
miRNA:   3'- aUGGCCAU---------CCAGGauGGCCAuCCAUa -5'
9283 5' -55.5 NC_002512.2 + 108445 0.66 0.949177
Target:  5'- gGCCGGgGGGUCCcuccCCGGgcGGc-- -3'
miRNA:   3'- aUGGCCaUCCAGGau--GGCCauCCaua -5'
9283 5' -55.5 NC_002512.2 + 105920 0.66 0.944903
Target:  5'- -uCCGGUGGGUCCU-CgGGgAGGc-- -3'
miRNA:   3'- auGGCCAUCCAGGAuGgCCaUCCaua -5'
9283 5' -55.5 NC_002512.2 + 175596 0.67 0.935665
Target:  5'- cGCCGuGcGGGUCCUuCgGGUGGGg-- -3'
miRNA:   3'- aUGGC-CaUCCAGGAuGgCCAUCCaua -5'
9283 5' -55.5 NC_002512.2 + 102369 0.67 0.935665
Target:  5'- -uCCGG-AGGUCCUggaGCCGGacgAGGg-- -3'
miRNA:   3'- auGGCCaUCCAGGA---UGGCCa--UCCaua -5'
9283 5' -55.5 NC_002512.2 + 24831 0.67 0.930698
Target:  5'- aGCCaGUAGGUCCgggcccgcgGCCGGUcGGc-- -3'
miRNA:   3'- aUGGcCAUCCAGGa--------UGGCCAuCCaua -5'
9283 5' -55.5 NC_002512.2 + 109631 0.67 0.9144
Target:  5'- aGCCGGc-GGUCCcGCgGGUAGGc-- -3'
miRNA:   3'- aUGGCCauCCAGGaUGgCCAUCCaua -5'
9283 5' -55.5 NC_002512.2 + 158545 0.7 0.820882
Target:  5'- gGCUGGU-GGaCCUGCUGGUGGGc-- -3'
miRNA:   3'- aUGGCCAuCCaGGAUGGCCAUCCaua -5'
9283 5' -55.5 NC_002512.2 + 131351 0.7 0.820882
Target:  5'- cGCCGGgcgAGGUCCcaGCCGGcgcGGUGg -3'
miRNA:   3'- aUGGCCa--UCCAGGa-UGGCCau-CCAUa -5'
9283 5' -55.5 NC_002512.2 + 153657 0.73 0.669761
Target:  5'- cUACCuaUAGGaaCCUACCGGUAGGUAc -3'
miRNA:   3'- -AUGGccAUCCa-GGAUGGCCAUCCAUa -5'
9283 5' -55.5 NC_002512.2 + 110564 0.73 0.669761
Target:  5'- cGCgCGGgAGGUCCUGCCGGgucAGGa-- -3'
miRNA:   3'- aUG-GCCaUCCAGGAUGGCCa--UCCaua -5'
9283 5' -55.5 NC_002512.2 + 92571 0.74 0.589055
Target:  5'- cGCCGGUAGGUCgCUcUCGGUAcguGGUGUc -3'
miRNA:   3'- aUGGCCAUCCAG-GAuGGCCAU---CCAUA- -5'
9283 5' -55.5 NC_002512.2 + 76230 0.79 0.337679
Target:  5'- cUACCGGUAGGuUCCUAuaGGUAGGUc- -3'
miRNA:   3'- -AUGGCCAUCC-AGGAUggCCAUCCAua -5'
9283 5' -55.5 NC_002512.2 + 153631 0.89 0.091565
Target:  5'- cUACCGGUAGGaCCUACCGGUAGGa-- -3'
miRNA:   3'- -AUGGCCAUCCaGGAUGGCCAUCCaua -5'
9283 5' -55.5 NC_002512.2 + 76257 1.04 0.008755
Target:  5'- cUACCGGUAGGUCCUACCGGUAGGUAUa -3'
miRNA:   3'- -AUGGCCAUCCAGGAUGGCCAUCCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.