miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9284 3' -57.9 NC_002512.2 + 18682 0.66 0.916257
Target:  5'- aGAGGaagagcucGUGGGCGGcgggcaccccgagcaGGGCGGcgacgCGCUCGg -3'
miRNA:   3'- -UUCC--------CACCCGCC---------------UCUGCUua---GCGAGC- -5'
9284 3' -57.9 NC_002512.2 + 101465 0.66 0.91058
Target:  5'- gGGGGGUGGacaccgGCcGAgaccccccguccccgGACGAGUCGCUCu -3'
miRNA:   3'- -UUCCCACC------CGcCU---------------CUGCUUAGCGAGc -5'
9284 3' -57.9 NC_002512.2 + 76672 0.66 0.908248
Target:  5'- cGGGGgaaccgGGGCGG-GACGggUC-C-CGg -3'
miRNA:   3'- uUCCCa-----CCCGCCuCUGCuuAGcGaGC- -5'
9284 3' -57.9 NC_002512.2 + 101534 0.66 0.904684
Target:  5'- cGAGGGggaaggagacggcgGcGGCGGGGACGgAGUCGaggUCGa -3'
miRNA:   3'- -UUCCCa-------------C-CCGCCUCUGC-UUAGCg--AGC- -5'
9284 3' -57.9 NC_002512.2 + 118322 0.66 0.902264
Target:  5'- -cGGGUGGaCGG-GACGGAcgCGCUgGu -3'
miRNA:   3'- uuCCCACCcGCCuCUGCUUa-GCGAgC- -5'
9284 3' -57.9 NC_002512.2 + 155026 0.66 0.902264
Target:  5'- -cGGGUGcGGUuccGGAG-CGGAUCGCgaCGg -3'
miRNA:   3'- uuCCCAC-CCG---CCUCuGCUUAGCGa-GC- -5'
9284 3' -57.9 NC_002512.2 + 97331 0.66 0.889651
Target:  5'- cGGGGUcgaGGGCGGAGAggcCGAcggCGC-CGc -3'
miRNA:   3'- uUCCCA---CCCGCCUCU---GCUua-GCGaGC- -5'
9284 3' -57.9 NC_002512.2 + 228714 0.67 0.876197
Target:  5'- aAAGGGUGcGaagaagaacuGCGGAGACGGA-CGCggaCGg -3'
miRNA:   3'- -UUCCCAC-C----------CGCCUCUGCUUaGCGa--GC- -5'
9284 3' -57.9 NC_002512.2 + 219879 0.67 0.872001
Target:  5'- cGAGGccgGGGuCGGAGACGAGccgaccgcccuccucUCGuCUCGu -3'
miRNA:   3'- -UUCCca-CCC-GCCUCUGCUU---------------AGC-GAGC- -5'
9284 3' -57.9 NC_002512.2 + 149420 0.67 0.869164
Target:  5'- cGAGGGgaccGcGGCGGGGGCGGG-CGCg-- -3'
miRNA:   3'- -UUCCCa---C-CCGCCUCUGCUUaGCGagc -5'
9284 3' -57.9 NC_002512.2 + 100068 0.67 0.869164
Target:  5'- cGGGGgccgcGGGcCGGGGACGGAgCGgUCa -3'
miRNA:   3'- uUCCCa----CCC-GCCUCUGCUUaGCgAGc -5'
9284 3' -57.9 NC_002512.2 + 81979 0.67 0.861934
Target:  5'- -cGGGUGguggcGGCGGGGGCGucucgggggcGGUCGCggCGa -3'
miRNA:   3'- uuCCCAC-----CCGCCUCUGC----------UUAGCGa-GC- -5'
9284 3' -57.9 NC_002512.2 + 154906 0.67 0.854511
Target:  5'- gGAGGGUGcuuGGUGGgggaaacguGGGCGGAcCGCUCu -3'
miRNA:   3'- -UUCCCAC---CCGCC---------UCUGCUUaGCGAGc -5'
9284 3' -57.9 NC_002512.2 + 119345 0.68 0.831146
Target:  5'- --cGG-GGGCGGAaacgccggucacGGCGAcUCGCUCGc -3'
miRNA:   3'- uucCCaCCCGCCU------------CUGCUuAGCGAGC- -5'
9284 3' -57.9 NC_002512.2 + 130852 0.68 0.831146
Target:  5'- cGGcGGUcGGGCGaggcccccaccGGGcGCGAGUCGCUCGu -3'
miRNA:   3'- uUC-CCA-CCCGC-----------CUC-UGCUUAGCGAGC- -5'
9284 3' -57.9 NC_002512.2 + 123142 0.68 0.823013
Target:  5'- cGGGGgacgGGGCGGcGGCGccgcGAUCGC-CGc -3'
miRNA:   3'- uUCCCa---CCCGCCuCUGC----UUAGCGaGC- -5'
9284 3' -57.9 NC_002512.2 + 98747 0.68 0.797676
Target:  5'- -cGGGUGGcGCGGGuuGACGAAgacgggCGC-CGa -3'
miRNA:   3'- uuCCCACC-CGCCU--CUGCUUa-----GCGaGC- -5'
9284 3' -57.9 NC_002512.2 + 28075 0.68 0.796809
Target:  5'- -cGGGcGcGGCGGAGACGGcggagagGUCGC-CGc -3'
miRNA:   3'- uuCCCaC-CCGCCUCUGCU-------UAGCGaGC- -5'
9284 3' -57.9 NC_002512.2 + 109826 0.69 0.785412
Target:  5'- uGAGGGgaguccccugGGGCGGcaggguuuuacccGACGggUUGCUCa -3'
miRNA:   3'- -UUCCCa---------CCCGCCu------------CUGCuuAGCGAGc -5'
9284 3' -57.9 NC_002512.2 + 219842 0.69 0.761988
Target:  5'- gGGGGGUccGGCccGGGGGCGGAUCGCggaCGg -3'
miRNA:   3'- -UUCCCAc-CCG--CCUCUGCUUAGCGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.