miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9284 5' -65.4 NC_002512.2 + 162241 0.66 0.60965
Target:  5'- cCGCGUCCGGg-GGCCcguggacgaccgUGUCGCCGUa- -3'
miRNA:   3'- -GCGCGGGCCggCCGG------------ACGGCGGUAag -5'
9284 5' -65.4 NC_002512.2 + 18528 0.66 0.60965
Target:  5'- cCGCGCCgGG-CGGUCagGCCGCgCGcgUCc -3'
miRNA:   3'- -GCGCGGgCCgGCCGGa-CGGCG-GUa-AG- -5'
9284 5' -65.4 NC_002512.2 + 55669 0.66 0.60965
Target:  5'- uCGaCGCCgGGCgGGgCgcugaacgcGCCGCUGUUCg -3'
miRNA:   3'- -GC-GCGGgCCGgCCgGa--------CGGCGGUAAG- -5'
9284 5' -65.4 NC_002512.2 + 60323 0.66 0.60965
Target:  5'- aCGCGgagacgCCGGCgaaGGCCacGCCGCCGggCa -3'
miRNA:   3'- -GCGCg-----GGCCGg--CCGGa-CGGCGGUaaG- -5'
9284 5' -65.4 NC_002512.2 + 20569 0.66 0.60965
Target:  5'- uCGuCGUCCaGGUCGacCCUgacGCCGCCGUUCu -3'
miRNA:   3'- -GC-GCGGG-CCGGCc-GGA---CGGCGGUAAG- -5'
9284 5' -65.4 NC_002512.2 + 126512 0.66 0.60965
Target:  5'- aGCGCCuCGGCggcuccggCGGCCUGaCCucgaccguGCCGUcCg -3'
miRNA:   3'- gCGCGG-GCCG--------GCCGGAC-GG--------CGGUAaG- -5'
9284 5' -65.4 NC_002512.2 + 135790 0.66 0.60965
Target:  5'- gGCGgaggagUCGGaCCGGCC-GCCGCCGUc- -3'
miRNA:   3'- gCGCg-----GGCC-GGCCGGaCGGCGGUAag -5'
9284 5' -65.4 NC_002512.2 + 136074 0.66 0.60965
Target:  5'- uGgGUCCGGCCGGggggccggCUGCggaCGCCcgUCa -3'
miRNA:   3'- gCgCGGGCCGGCCg-------GACG---GCGGuaAG- -5'
9284 5' -65.4 NC_002512.2 + 173351 0.66 0.60965
Target:  5'- aCGCGCCUGGaCGuCCUGCUcCCGUg- -3'
miRNA:   3'- -GCGCGGGCCgGCcGGACGGcGGUAag -5'
9284 5' -65.4 NC_002512.2 + 148974 0.66 0.604016
Target:  5'- gGCGCCCGcgcgacccaccaccuGaaccaCCGGCCgggggGCCGCCGc-- -3'
miRNA:   3'- gCGCGGGC---------------C-----GGCCGGa----CGGCGGUaag -5'
9284 5' -65.4 NC_002512.2 + 218220 0.66 0.600264
Target:  5'- uCGgGCCgCGGCgGGCCgcGgCGCCGa-- -3'
miRNA:   3'- -GCgCGG-GCCGgCCGGa-CgGCGGUaag -5'
9284 5' -65.4 NC_002512.2 + 180439 0.66 0.600264
Target:  5'- gGCGcCCCGGgCGGCgc-CCGUCAUUUc -3'
miRNA:   3'- gCGC-GGGCCgGCCGgacGGCGGUAAG- -5'
9284 5' -65.4 NC_002512.2 + 117725 0.66 0.600264
Target:  5'- gCGgGCUCGagcGCCGGCUcGCCGUCGa-- -3'
miRNA:   3'- -GCgCGGGC---CGGCCGGaCGGCGGUaag -5'
9284 5' -65.4 NC_002512.2 + 2795 0.66 0.600264
Target:  5'- -cCGaCCCGGCCGGCg-GCCGgCGg-- -3'
miRNA:   3'- gcGC-GGGCCGGCCGgaCGGCgGUaag -5'
9284 5' -65.4 NC_002512.2 + 18561 0.66 0.600264
Target:  5'- aGCGCCCGGgcCCGGa---CCGCCAc-- -3'
miRNA:   3'- gCGCGGGCC--GGCCggacGGCGGUaag -5'
9284 5' -65.4 NC_002512.2 + 129542 0.66 0.600264
Target:  5'- cCGUGCUgcgUGGCCGGCgc-CCGCCAgUCc -3'
miRNA:   3'- -GCGCGG---GCCGGCCGgacGGCGGUaAG- -5'
9284 5' -65.4 NC_002512.2 + 96304 0.66 0.600264
Target:  5'- cCGcCGCCgCgGGCgGGCCgGUCGCCGc-- -3'
miRNA:   3'- -GC-GCGG-G-CCGgCCGGaCGGCGGUaag -5'
9284 5' -65.4 NC_002512.2 + 26530 0.66 0.600264
Target:  5'- cCGCgGCCUGGUCGGCa-GCuCGCCc--- -3'
miRNA:   3'- -GCG-CGGGCCGGCCGgaCG-GCGGuaag -5'
9284 5' -65.4 NC_002512.2 + 45244 0.66 0.600264
Target:  5'- gGCGCCCGcggacucgccGUCGGCC-GCCGgCGg-- -3'
miRNA:   3'- gCGCGGGC----------CGGCCGGaCGGCgGUaag -5'
9284 5' -65.4 NC_002512.2 + 112946 0.66 0.600264
Target:  5'- gGCGcCCCGGUCGaGCCccgaGUCGUCGggcgUCa -3'
miRNA:   3'- gCGC-GGGCCGGC-CGGa---CGGCGGUa---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.