miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9285 3' -51 NC_002512.2 + 100046 0.66 0.99749
Target:  5'- -----cGCCgGGCGCuGAGACGCGGGGg -3'
miRNA:   3'- caugcaCGGgUCGCG-CUUUGUGUUUU- -5'
9285 3' -51 NC_002512.2 + 192596 0.66 0.997029
Target:  5'- -aACGUGUUCGGCcCGAAAC-CGGAAc -3'
miRNA:   3'- caUGCACGGGUCGcGCUUUGuGUUUU- -5'
9285 3' -51 NC_002512.2 + 74917 0.66 0.997029
Target:  5'- -cGCGgagGCCCGGagGCGGAuCGCGGAc -3'
miRNA:   3'- caUGCa--CGGGUCg-CGCUUuGUGUUUu -5'
9285 3' -51 NC_002512.2 + 99533 0.66 0.996501
Target:  5'- -cGCGUGUCCcGCuCGAugcAGCGCAGGAg -3'
miRNA:   3'- caUGCACGGGuCGcGCU---UUGUGUUUU- -5'
9285 3' -51 NC_002512.2 + 130769 0.66 0.996501
Target:  5'- -----cGCCgCGGCGCGGAcCACGAGGa -3'
miRNA:   3'- caugcaCGG-GUCGCGCUUuGUGUUUU- -5'
9285 3' -51 NC_002512.2 + 85263 0.66 0.996501
Target:  5'- -cGCGUggccgccacGUCCAGCGCG--GCGCGGAc -3'
miRNA:   3'- caUGCA---------CGGGUCGCGCuuUGUGUUUu -5'
9285 3' -51 NC_002512.2 + 107966 0.66 0.996501
Target:  5'- -gGCGUccagGgCCAGgGCGAAGgCGCAGAAg -3'
miRNA:   3'- caUGCA----CgGGUCgCGCUUU-GUGUUUU- -5'
9285 3' -51 NC_002512.2 + 187254 0.66 0.996501
Target:  5'- cUGCGaGuCCCAGCGUGGu-CGCAAAu -3'
miRNA:   3'- cAUGCaC-GGGUCGCGCUuuGUGUUUu -5'
9285 3' -51 NC_002512.2 + 91484 0.66 0.996501
Target:  5'- cUugGUgGCCCgcGGCuCGAAGCGCAGGc -3'
miRNA:   3'- cAugCA-CGGG--UCGcGCUUUGUGUUUu -5'
9285 3' -51 NC_002512.2 + 130153 0.66 0.996444
Target:  5'- -cGCGggGCCCGGCgGCGGgccggcccgcgacGGCGCGGAc -3'
miRNA:   3'- caUGCa-CGGGUCG-CGCU-------------UUGUGUUUu -5'
9285 3' -51 NC_002512.2 + 5545 0.66 0.995897
Target:  5'- -cGCGacCCCGGCGCGGcgcCGCGGAAa -3'
miRNA:   3'- caUGCacGGGUCGCGCUuu-GUGUUUU- -5'
9285 3' -51 NC_002512.2 + 109403 0.66 0.995897
Target:  5'- -gGCGUcgucCCCAGCgucuccucuucGCGAAACACGAu- -3'
miRNA:   3'- caUGCAc---GGGUCG-----------CGCUUUGUGUUuu -5'
9285 3' -51 NC_002512.2 + 87867 0.66 0.995897
Target:  5'- cUugGUGUUCAGCGCGuacGACAgGGc- -3'
miRNA:   3'- cAugCACGGGUCGCGCu--UUGUgUUuu -5'
9285 3' -51 NC_002512.2 + 27582 0.66 0.995897
Target:  5'- -aGCG-GCCCaaaAGCGCGGcGGCACGGc- -3'
miRNA:   3'- caUGCaCGGG---UCGCGCU-UUGUGUUuu -5'
9285 3' -51 NC_002512.2 + 10508 0.66 0.995897
Target:  5'- -aGCGgaggcaGCCCAGgGagcaGAGGCGCAGGAc -3'
miRNA:   3'- caUGCa-----CGGGUCgCg---CUUUGUGUUUU- -5'
9285 3' -51 NC_002512.2 + 72530 0.66 0.995496
Target:  5'- -gGCG-GCCCGGaccucggcggccagGCGGAACACGGAc -3'
miRNA:   3'- caUGCaCGGGUCg-------------CGCUUUGUGUUUu -5'
9285 3' -51 NC_002512.2 + 90122 0.66 0.995211
Target:  5'- -cGCGggcGCCCGguGCGCGAGGgcCGCGGAGa -3'
miRNA:   3'- caUGCa--CGGGU--CGCGCUUU--GUGUUUU- -5'
9285 3' -51 NC_002512.2 + 137216 0.66 0.995211
Target:  5'- -gGCGcGCCCGGCGCGGgcGGC-CGu-- -3'
miRNA:   3'- caUGCaCGGGUCGCGCU--UUGuGUuuu -5'
9285 3' -51 NC_002512.2 + 4445 0.66 0.995211
Target:  5'- -gGgGUGCCgGGCGCGggGguCGGc- -3'
miRNA:   3'- caUgCACGGgUCGCGCuuUguGUUuu -5'
9285 3' -51 NC_002512.2 + 171142 0.66 0.995211
Target:  5'- -gACGUGUCCgacugAGCGCGcGACGCc--- -3'
miRNA:   3'- caUGCACGGG-----UCGCGCuUUGUGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.