miRNA display CGI


Results 1 - 20 of 450 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9285 5' -61 NC_002512.2 + 112166 0.66 0.825937
Target:  5'- -cCCUCGcacccaugucgcugcGCACCCGCCgcaGGUGCGCCa -3'
miRNA:   3'- uuGGAGC---------------UGUGGGCGGg--CUGUGCGGg -5'
9285 5' -61 NC_002512.2 + 186789 0.66 0.822749
Target:  5'- -cCCUCGAgcCGuCCCcgcuGCUCGcCGCGCCCc -3'
miRNA:   3'- uuGGAGCU--GU-GGG----CGGGCuGUGCGGG- -5'
9285 5' -61 NC_002512.2 + 5731 0.66 0.822749
Target:  5'- cGCCcCcGC-CCCGCCUcACGCGUCCg -3'
miRNA:   3'- uUGGaGcUGuGGGCGGGcUGUGCGGG- -5'
9285 5' -61 NC_002512.2 + 40264 0.66 0.822749
Target:  5'- cGACCgCGACgAUCgCGUgCGGC-CGCCCg -3'
miRNA:   3'- -UUGGaGCUG-UGG-GCGgGCUGuGCGGG- -5'
9285 5' -61 NC_002512.2 + 99082 0.66 0.822749
Target:  5'- gAACCUCGGcCACCgCGUgCuGCGCGUCg -3'
miRNA:   3'- -UUGGAGCU-GUGG-GCGgGcUGUGCGGg -5'
9285 5' -61 NC_002512.2 + 10207 0.66 0.822749
Target:  5'- -uCCUCGuC-CUCGggCGGCGCGCCCa -3'
miRNA:   3'- uuGGAGCuGuGGGCggGCUGUGCGGG- -5'
9285 5' -61 NC_002512.2 + 66878 0.66 0.822749
Target:  5'- uGACCUCGGg--CCGCUCGAggaACGCCa -3'
miRNA:   3'- -UUGGAGCUgugGGCGGGCUg--UGCGGg -5'
9285 5' -61 NC_002512.2 + 7222 0.66 0.822749
Target:  5'- --aCUCGagGCGCCCcucgGCCCGGC-CGgCCg -3'
miRNA:   3'- uugGAGC--UGUGGG----CGGGCUGuGCgGG- -5'
9285 5' -61 NC_002512.2 + 134102 0.66 0.822749
Target:  5'- -cCC-CGGCGCcuaCCGCUCGG-ACGCCCc -3'
miRNA:   3'- uuGGaGCUGUG---GGCGGGCUgUGCGGG- -5'
9285 5' -61 NC_002512.2 + 72769 0.66 0.822749
Target:  5'- cGACCccCGACGCCgggagggacguCGCCgGgACGgGCCCg -3'
miRNA:   3'- -UUGGa-GCUGUGG-----------GCGGgC-UGUgCGGG- -5'
9285 5' -61 NC_002512.2 + 69012 0.66 0.822749
Target:  5'- gAACCcuccgcCGACGugUCCGCCCcucugcGACuGCGCCCa -3'
miRNA:   3'- -UUGGa-----GCUGU--GGGCGGG------CUG-UGCGGG- -5'
9285 5' -61 NC_002512.2 + 137921 0.66 0.822749
Target:  5'- -cCCUCcgGACGugccgcUCCGCCCuGGCgaucGCGCCCa -3'
miRNA:   3'- uuGGAG--CUGU------GGGCGGG-CUG----UGCGGG- -5'
9285 5' -61 NC_002512.2 + 173344 0.66 0.822749
Target:  5'- -uCC-CGGCACgCGCCUGG-ACGUCCu -3'
miRNA:   3'- uuGGaGCUGUGgGCGGGCUgUGCGGG- -5'
9285 5' -61 NC_002512.2 + 216168 0.66 0.822749
Target:  5'- -cCCUCaGGCuCCCGCgucUCGGgauCGCGCCCg -3'
miRNA:   3'- uuGGAG-CUGuGGGCG---GGCU---GUGCGGG- -5'
9285 5' -61 NC_002512.2 + 218869 0.66 0.822749
Target:  5'- -cCCggGGCACCgaCGCCguGCGCGCCCu -3'
miRNA:   3'- uuGGagCUGUGG--GCGGgcUGUGCGGG- -5'
9285 5' -61 NC_002512.2 + 221734 0.66 0.822749
Target:  5'- -cCC-CGAgCGCCUGgCgGACGCGCCg -3'
miRNA:   3'- uuGGaGCU-GUGGGCgGgCUGUGCGGg -5'
9285 5' -61 NC_002512.2 + 113286 0.66 0.822749
Target:  5'- cAGCCgCGGCGggccuCCCGCCCu---CGCCCc -3'
miRNA:   3'- -UUGGaGCUGU-----GGGCGGGcuguGCGGG- -5'
9285 5' -61 NC_002512.2 + 210987 0.66 0.822749
Target:  5'- cGCCUgCGugGCCgCGCaguaCGGCGUGUCCa -3'
miRNA:   3'- uUGGA-GCugUGG-GCGg---GCUGUGCGGG- -5'
9285 5' -61 NC_002512.2 + 226635 0.66 0.821948
Target:  5'- gGACCga---GCCCGCggaccgucgucacCCGACGCGCCg -3'
miRNA:   3'- -UUGGagcugUGGGCG-------------GGCUGUGCGGg -5'
9285 5' -61 NC_002512.2 + 140101 0.66 0.817921
Target:  5'- aGACgaCGACGCUCuccccgaugucagauGCCCG-CGCGCCg -3'
miRNA:   3'- -UUGgaGCUGUGGG---------------CGGGCuGUGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.