miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 3' -59.6 NC_002512.2 + 215104 0.66 0.861769
Target:  5'- cGUCgccgccgcGGCCGaccGCCAGaacGGCCGGGGUCc -3'
miRNA:   3'- -CAGauc-----UUGGC---CGGUC---CUGGCCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 181675 0.66 0.861769
Target:  5'- aGUCgcgcccCgCGGCCGGGAucCCGcGGGUCa -3'
miRNA:   3'- -CAGaucuu-G-GCCGGUCCU--GGC-CCCAG- -5'
9286 3' -59.6 NC_002512.2 + 9061 0.66 0.861769
Target:  5'- cGUCgacGAGCaCGGCCagcggcGGGACCacgagcGGGUCg -3'
miRNA:   3'- -CAGau-CUUG-GCCGG------UCCUGGc-----CCCAG- -5'
9286 3' -59.6 NC_002512.2 + 107914 0.66 0.861769
Target:  5'- cGUCccgccGGCgGGCgGGGACCcGGGUCa -3'
miRNA:   3'- -CAGauc--UUGgCCGgUCCUGGcCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 6948 0.66 0.861769
Target:  5'- --gUAGAgGCCGGCCAGGucguuggcCCGcGGGcCg -3'
miRNA:   3'- cagAUCU-UGGCCGGUCCu-------GGC-CCCaG- -5'
9286 3' -59.6 NC_002512.2 + 97416 0.66 0.861044
Target:  5'- -cCUGGGGCUGGCCAcgauggugcuGGcgcugucgcuggcGCUGGGGUUc -3'
miRNA:   3'- caGAUCUUGGCCGGU----------CC-------------UGGCCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 55022 0.66 0.854431
Target:  5'- cGUCgaucgAGAGCCGGUCGGGccgccuACCGacGGGa- -3'
miRNA:   3'- -CAGa----UCUUGGCCGGUCC------UGGC--CCCag -5'
9286 3' -59.6 NC_002512.2 + 188920 0.66 0.854431
Target:  5'- gGUCggAGAGucCCGGUggCGGGGCgCGGcGGUCg -3'
miRNA:   3'- -CAGa-UCUU--GGCCG--GUCCUG-GCC-CCAG- -5'
9286 3' -59.6 NC_002512.2 + 68342 0.66 0.853687
Target:  5'- -cCUGGuAACCGGCCAccauccaguccccGGGCuCGGcGGUg -3'
miRNA:   3'- caGAUC-UUGGCCGGU-------------CCUG-GCC-CCAg -5'
9286 3' -59.6 NC_002512.2 + 168127 0.66 0.853687
Target:  5'- ---aGGGGcCCGGCCgcggcgaGGGGCUGGGGg- -3'
miRNA:   3'- cagaUCUU-GGCCGG-------UCCUGGCCCCag -5'
9286 3' -59.6 NC_002512.2 + 95685 0.66 0.84691
Target:  5'- cGUCcgccgGGccuCCGGCgGGGACgGGGGg- -3'
miRNA:   3'- -CAGa----UCuu-GGCCGgUCCUGgCCCCag -5'
9286 3' -59.6 NC_002512.2 + 128795 0.66 0.84691
Target:  5'- cUCUGGGucuCCGGCguGGuCCGcGGG-Cg -3'
miRNA:   3'- cAGAUCUu--GGCCGguCCuGGC-CCCaG- -5'
9286 3' -59.6 NC_002512.2 + 112758 0.66 0.839213
Target:  5'- ---gAGAGCCGGCCGucccGGACaCGGuGGcCu -3'
miRNA:   3'- cagaUCUUGGCCGGU----CCUG-GCC-CCaG- -5'
9286 3' -59.6 NC_002512.2 + 166586 0.66 0.831345
Target:  5'- uGUCgggAGAACgGGCUGGaGAaggaGGGGUCc -3'
miRNA:   3'- -CAGa--UCUUGgCCGGUC-CUgg--CCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 166469 0.66 0.831345
Target:  5'- cUCgAGGGCgGGgacggCGGGACCGcGGGUCg -3'
miRNA:   3'- cAGaUCUUGgCCg----GUCCUGGC-CCCAG- -5'
9286 3' -59.6 NC_002512.2 + 219864 0.66 0.823312
Target:  5'- aUCgcGGACgGGUgAcGaGGCCGGGGUCg -3'
miRNA:   3'- cAGauCUUGgCCGgU-C-CUGGCCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 224713 0.67 0.815122
Target:  5'- -gCUGGGGCCGGCCGccGCCccGGUCg -3'
miRNA:   3'- caGAUCUUGGCCGGUccUGGccCCAG- -5'
9286 3' -59.6 NC_002512.2 + 141132 0.67 0.815122
Target:  5'- -aCUAucaccACCGGCUcGG-CCGGGGUCc -3'
miRNA:   3'- caGAUcu---UGGCCGGuCCuGGCCCCAG- -5'
9286 3' -59.6 NC_002512.2 + 42173 0.67 0.815122
Target:  5'- -cCUuGAGCCGgaaaGCCAGGGUCGGGGg- -3'
miRNA:   3'- caGAuCUUGGC----CGGUCCUGGCCCCag -5'
9286 3' -59.6 NC_002512.2 + 111925 0.67 0.814295
Target:  5'- uUCgGGuGCCGGaacagcuCCAGGucggcgcucACCGGGGUCa -3'
miRNA:   3'- cAGaUCuUGGCC-------GGUCC---------UGGCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.