miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9287 3' -56.5 NC_002512.2 + 3467 0.66 0.965401
Target:  5'- aGGUC-CCGcgUC-CGGAGACgCGGa-- -3'
miRNA:   3'- -CCAGaGGCa-AGuGCCUCUGgGCCaca -5'
9287 3' -56.5 NC_002512.2 + 134269 0.66 0.965401
Target:  5'- uGGcCUUCGUcguccgCGCGGGGuCCCGGa-- -3'
miRNA:   3'- -CCaGAGGCAa-----GUGCCUCuGGGCCaca -5'
9287 3' -56.5 NC_002512.2 + 162232 0.66 0.962208
Target:  5'- cGGUCgagcCCGcgUC-CGGGGGCCCG-UGg -3'
miRNA:   3'- -CCAGa---GGCa-AGuGCCUCUGGGCcACa -5'
9287 3' -56.5 NC_002512.2 + 199626 0.66 0.955218
Target:  5'- cGG-CUCCGcgcgucCGCGGGGACCCGu--- -3'
miRNA:   3'- -CCaGAGGCaa----GUGCCUCUGGGCcaca -5'
9287 3' -56.5 NC_002512.2 + 42847 0.66 0.955218
Target:  5'- cGUCUCC----AgGGAGGCCCGGUc- -3'
miRNA:   3'- cCAGAGGcaagUgCCUCUGGGCCAca -5'
9287 3' -56.5 NC_002512.2 + 119422 0.66 0.955218
Target:  5'- cGGgag-CGUggacCGCGGGGACCUGGUGc -3'
miRNA:   3'- -CCagagGCAa---GUGCCUCUGGGCCACa -5'
9287 3' -56.5 NC_002512.2 + 31507 0.66 0.955218
Target:  5'- uGGUCcagagcCUGaUCACGGAGGCCaCGGa-- -3'
miRNA:   3'- -CCAGa-----GGCaAGUGCCUCUGG-GCCaca -5'
9287 3' -56.5 NC_002512.2 + 89501 0.66 0.951414
Target:  5'- cGUUUgUGUaccgCGCGGAGACgUCGGUGUu -3'
miRNA:   3'- cCAGAgGCAa---GUGCCUCUG-GGCCACA- -5'
9287 3' -56.5 NC_002512.2 + 194525 0.66 0.951414
Target:  5'- ----aCCGggucaUCAUGGAGGCCCGGg-- -3'
miRNA:   3'- ccagaGGCa----AGUGCCUCUGGGCCaca -5'
9287 3' -56.5 NC_002512.2 + 176516 0.66 0.9474
Target:  5'- cGGUCUCCGgagcgUCcucuauguGCGGAGGCUCGc--- -3'
miRNA:   3'- -CCAGAGGCa----AG--------UGCCUCUGGGCcaca -5'
9287 3' -56.5 NC_002512.2 + 113473 0.67 0.93873
Target:  5'- uGUCguagCUGUUCGCGaAGGCCaGGUGUc -3'
miRNA:   3'- cCAGa---GGCAAGUGCcUCUGGgCCACA- -5'
9287 3' -56.5 NC_002512.2 + 23992 0.67 0.93873
Target:  5'- gGGUC-CCGcgaGCGGGGACCCGcGa-- -3'
miRNA:   3'- -CCAGaGGCaagUGCCUCUGGGC-Caca -5'
9287 3' -56.5 NC_002512.2 + 208228 0.67 0.93873
Target:  5'- aGUCUCCGa-CAUGGAcgaggagaaGGCCCGGUc- -3'
miRNA:   3'- cCAGAGGCaaGUGCCU---------CUGGGCCAca -5'
9287 3' -56.5 NC_002512.2 + 205897 0.67 0.934071
Target:  5'- gGGUCcCCGcUCGCGG-GACCCGu--- -3'
miRNA:   3'- -CCAGaGGCaAGUGCCuCUGGGCcaca -5'
9287 3' -56.5 NC_002512.2 + 191672 0.67 0.934071
Target:  5'- cGUCUCCGcuaucgUCGCGGGauuGCCCuGUGUc -3'
miRNA:   3'- cCAGAGGCa-----AGUGCCUc--UGGGcCACA- -5'
9287 3' -56.5 NC_002512.2 + 189806 0.67 0.929194
Target:  5'- -cUCUCCGaUC-CGGGGACacgagaCGGUGg -3'
miRNA:   3'- ccAGAGGCaAGuGCCUCUGg-----GCCACa -5'
9287 3' -56.5 NC_002512.2 + 105001 0.67 0.924097
Target:  5'- cGGUCgCCGUg-ACGGGGccgccGCCCGGUu- -3'
miRNA:   3'- -CCAGaGGCAagUGCCUC-----UGGGCCAca -5'
9287 3' -56.5 NC_002512.2 + 31129 0.67 0.922526
Target:  5'- aGGUCcCCGagacgaaggccgucUUCGCGGAccuGGCCCGGg-- -3'
miRNA:   3'- -CCAGaGGC--------------AAGUGCCU---CUGGGCCaca -5'
9287 3' -56.5 NC_002512.2 + 207905 0.68 0.913251
Target:  5'- cGGUggCUCCucgaCGCGGAGcucgaacggGCCCGGUGg -3'
miRNA:   3'- -CCA--GAGGcaa-GUGCCUC---------UGGGCCACa -5'
9287 3' -56.5 NC_002512.2 + 107914 0.68 0.907502
Target:  5'- cGUCccgCCGgcggGCGGGGACCCGGg-- -3'
miRNA:   3'- cCAGa--GGCaag-UGCCUCUGGGCCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.