miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 220682 0.66 0.970995
Target:  5'- ---cGugCuggGCGACgggaCGGAGGUCaGUCCc -3'
miRNA:   3'- cuauCugG---CGCUGa---GCCUCCAG-CAGG- -5'
9291 5' -55.2 NC_002512.2 + 195423 0.66 0.97614
Target:  5'- --gGGACgugcaGCGACugguUCGG-GGUCGUCa -3'
miRNA:   3'- cuaUCUGg----CGCUG----AGCCuCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 68919 0.67 0.9651
Target:  5'- -cUGGccGCCGCGGcCUCGGGGGga-UCCc -3'
miRNA:   3'- cuAUC--UGGCGCU-GAGCCUCCagcAGG- -5'
9291 5' -55.2 NC_002512.2 + 221345 0.67 0.9651
Target:  5'- ---cGACCGCGGgagaagaUGGAGGagCGUCCa -3'
miRNA:   3'- cuauCUGGCGCUga-----GCCUCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 116899 0.67 0.961521
Target:  5'- --gGGGCCGgGGCgggcuccUCGGAcGG-CGUCCc -3'
miRNA:   3'- cuaUCUGGCgCUG-------AGCCU-CCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 57025 0.67 0.961857
Target:  5'- ---uGACCGgGGggagCGGAGGccgCGUCCg -3'
miRNA:   3'- cuauCUGGCgCUga--GCCUCCa--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 22571 0.67 0.968438
Target:  5'- cGGUGGugCuggugaaCGGCUCGGAGGccacggugcuggacaCGUCCg -3'
miRNA:   3'- -CUAUCugGc------GCUGAGCCUCCa--------------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 80679 0.67 0.968144
Target:  5'- ---cGGCgGCGGCgaCGGGGGcgagcggCGUCCg -3'
miRNA:   3'- cuauCUGgCGCUGa-GCCUCCa------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 226321 0.67 0.95089
Target:  5'- uGUGGGCCGUGGCUCGGGacggcagacGGaUCuUCUa -3'
miRNA:   3'- cUAUCUGGCGCUGAGCCU---------CC-AGcAGG- -5'
9291 5' -55.2 NC_002512.2 + 92240 0.67 0.968144
Target:  5'- ---cGACCGgGACUCGGAcgaccGGcUGUCg -3'
miRNA:   3'- cuauCUGGCgCUGAGCCU-----CCaGCAGg -5'
9291 5' -55.2 NC_002512.2 + 106990 0.67 0.954756
Target:  5'- --aAGGCCGgGACgccCGGgccgGGGUCGgCCg -3'
miRNA:   3'- cuaUCUGGCgCUGa--GCC----UCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 74316 0.67 0.95841
Target:  5'- --gAGACCGCG--UCaGAGGUCccauaGUCCg -3'
miRNA:   3'- cuaUCUGGCGCugAGcCUCCAG-----CAGG- -5'
9291 5' -55.2 NC_002512.2 + 95872 0.67 0.95841
Target:  5'- --aGGGCCGCGcgccgaggauCUC-GAGGUCGcCCg -3'
miRNA:   3'- cuaUCUGGCGCu---------GAGcCUCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 192572 0.67 0.95841
Target:  5'- ---uGGCCGgGGcCUCGGAGcGgacCGUCCc -3'
miRNA:   3'- cuauCUGGCgCU-GAGCCUC-Ca--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 223742 0.67 0.961857
Target:  5'- --gAGACCGUcg--UGGAGGUCGugUCCg -3'
miRNA:   3'- cuaUCUGGCGcugaGCCUCCAGC--AGG- -5'
9291 5' -55.2 NC_002512.2 + 148803 0.67 0.961857
Target:  5'- ----cGCUGCGGCaccgucUCGGAGcUCGUCCu -3'
miRNA:   3'- cuaucUGGCGCUG------AGCCUCcAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 197194 0.67 0.961857
Target:  5'- cAUGGACC-CG-CUCGG-GGcCGUCUa -3'
miRNA:   3'- cUAUCUGGcGCuGAGCCuCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 227373 0.67 0.961857
Target:  5'- --gGGGCCGcCGGCgUCGGGGGagaucCGUUCc -3'
miRNA:   3'- cuaUCUGGC-GCUG-AGCCUCCa----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 202150 0.67 0.968144
Target:  5'- ----cGCCGCGGggCGGGuGGUCGUUCc -3'
miRNA:   3'- cuaucUGGCGCUgaGCCU-CCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 219819 0.67 0.9651
Target:  5'- --cGGGgCGCGACa-GGGGGUCGgucggggggUCCg -3'
miRNA:   3'- cuaUCUgGCGCUGagCCUCCAGC---------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.